Microbe : Niastella koreensis

Microbe Description

NBRC No.	106392
Scientific name	Niastella koreensis
Synonymous name	Not assigned
History	KACC 11465 <- H.-W. Weon, GH20-10
Other culture collection No.	DSM 17620=KACC 11465
Other No.	GH20-10
Reference	16902007 Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. (Int J Syst Evol Microbiol. 2006)

Functional Potential >>Details


Type	Pattern	Component Gene		CDS
Alanine racemization(NFUNC_0063)
Require	A	ALR (NRULE_0228)	Alanine racemase	Niako_5631
Alginate degradation(NFUNC_0062)
Require	B	ALY (NRULE_0227)	Alginate lyase	Niako_4104 Niako_5220
Aromatic azo compounds degradation(NFUNC_0073)
Require	A	AZOR (NRULE_0236)	FMN-dependent NADH-azoreductase	Niako_2531
Bacitracin resistance(NFUNC_0022)
Require	A	UPPP (NRULE_0097)	Undecaprenyl-diphosphatase	Niako_6936
Beta-lactam antibiotic resistance(NFUNC_0033)
Require	D	BLAD (NRULE_0125)	Beta-lactamase class D	Niako_6692
Macrolide antibiotic resistance(NFUNC_0045)
Require	D	ERE (NRULE_0168)	Erythromycin esterase	Niako_6162
Metal-binding protein(NFUNC_0105)
Require	C	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	Niako_1965
Molybdate transport (ABC transporter)(NFUNC_0097)
Require	A	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	Niako_1965
Participant		MODB (NRULE_0325)	Molybdate ABC transporter permease protein	Niako_1964
(R)-pantothenate biosynthesis(NFUNC_0030)
Require	A	PAND (NRULE_0115)	Aspartate 1-decarboxylase	Niako_1524
		PANB (NRULE_0116)	3-methyl-2-oxobutanoate hydroxymethyltransferase	Niako_2585
		PANE (NRULE_0117)	2-dehydropantoate 2-reductase	Niako_4263
		PANC (NRULE_0118)	Pantothenate synthetase	Niako_1525
Penicillin resistance(NFUNC_0047)
Require	B	BLAD (NRULE_0125)	Beta-lactamase class D	Niako_6692
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
Require	A	TREY (NRULE_0140)	Maltooligosyl trehalose synthase	Niako_3123
Require	A	TREZ (NRULE_0141)	Malto-oligosyltrehalose trehalohydrolase	Niako_3124
Participant		GLGX (NRULE_0139)	Glycogen debranching enzyme	Niako_3122
Trehalose biosynthesis (from maltose)(NFUNC_0034)
Require	B	TRES (NRULE_0128)	Trehalose synthase	Niako_0703

Genomic Overview

BioProject ID	PRJNA42711
Locus_tag	NIAKO
INSDC entries	CP003178
Sequence status	Complete
Current status	Finished
Contig number	1
Size(bp)	9,033,684
Gene	7,174
Finishing goal	Finished
Assembly method	Newbler v. 2.3
Coverage
Technology	454 Illumina

Reference

Data Download

Genomic nucleotide sequence	Nucleotide sequence of the coding regions	Translation of the coding sequneces	List of genes / ORFs
FASTA gz	FASTA gz	FASTA gz	TSV uncompressed

2.7 MB	2.4 MB	1.6 MB	549.8 KB