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Microbe : Niastella koreensis

Microbe Description

NBRC No. 106392
Scientific name Niastella koreensis
Synonymous name Not assigned
History KACC 11465 <- H.-W. Weon, GH20-10
Other culture collection No. DSM 17620=KACC 11465
Other No. GH20-10
Reference
16902007
Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. (Int J Syst Evol Microbiol. 2006)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseNiako_5631
Alginate degradation(NFUNC_0062)
RequireB
ALY
(NRULE_0227)
Alginate lyaseNiako_4104 Niako_5220
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseNiako_2531
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseNiako_6936
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireD
BLAD
(NRULE_0125)
Beta-lactamase class DNiako_6692
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseNiako_6162
Metal-binding protein(NFUNC_0105)
RequireC
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNiako_1965
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNiako_1965
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinNiako_1964
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseNiako_1524
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseNiako_2585
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseNiako_4263
PANC
(NRULE_0118)
Pantothenate synthetaseNiako_1525
Penicillin resistance(NFUNC_0047)
RequireB
BLAD
(NRULE_0125)
Beta-lactamase class DNiako_6692
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseNiako_3123
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseNiako_3124
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeNiako_3122
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseNiako_0703

Genomic Overview

BioProject IDPRJNA42711
Locus_tagNIAKO
INSDC entriesCP003178
Sequence statusComplete
Current statusFinished
Contig number1
Size(bp) 9,033,684
Gene 7,174
Finishing goalFinished
Assembly methodNewbler v. 2.3
Coverage
Technology
  • 454
  • Illumina
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
2.7 MB 2.4 MB 1.6 MB 549.8 KB