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Microbe : Lactobacillus farciminis

Microbe Description

NBRC No. 107150
Scientific name Lactobacillus farciminis
Synonymous name Not assigned
History NCIMB 11717 <- DSN 20184 <- G. Reuter, Rv4na
Other culture collection No. ATCC 29644=BCRC 14043=CCUG 30671=CECT 571=CIP 103136=DSM 20184=JCM 1097=KACC 12423=KCTC 3681=LMG 9200=NCDO 2330=NCFB 2330=NCIMB 11717=NRIC 0492=NRRL B-4566
Other No. Rv4na
Reference
23194598
Lactobacillus alimentarius sp. nov., nom rev. and Lactobacillus farciminis sp. nov., nom. rev. (Syst Appl Microbiol. 1983)

Functional Potential >>Details

Download
TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseLfarK3_010100002294
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseLfarK3_010100000710 LfarK3_010100003657
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseLfarK3_010100010434
Chloramphenicol resistance(NFUNC_0025)
RequireA
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseLfarK3_010100011759
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseLfarK3_010100001677
Malolactic fermentation(NFUNC_0070)
RequireA
MLE
(NRULE_0233)
Malolactic enzymeLfarK3_010100008091
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinLfarK3_010100006521
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinLfarK3_010100010314 LfarK3_010100006506
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinLfarK3_010100006506 LfarK3_010100010314
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinLfarK3_010100001952
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinLfarK3_010100001947
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinLfarK3_010100001942

Genomic Overview

BioProject IDPRJNA68107
Locus_tagLfarK3
INSDC entriesNZ_AEOT01000000
Sequence statusWGS
Current status
Contig number5
Size(bp) 2,470,630
Gene 2,452
Finishing goal
Assembly methodNewbler v. 2.3
Coverage30.4x
Technology
  • 454
Reference
  • Genome sequence of Lactobacillus farciminis KCTC 3681. (J Bacteriol. 2011) PMID: 21257766

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
748.1 KB 697.9 KB 461.9 KB 212.4 KB