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微生物 : Saccharomonospora viridis

微生物株情報

NBRC番号 12207
学名 Saccharomonospora viridis
別名(シノニム) 該当データなし
由来 IFO 12207 <- KCC A-0036 <- NRRL B-3044 <- Univ. College Dublin (E. Kuster & R. Locci, P-101)
他保存機関番号 ATCC 15386=CCUG 5913=DSM 43017=JCM 3036=NRRL B-3044=VKM Ac-681
他株番号 KCC A-0036=P-101
参考文献
該当データなし

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSvir_04590
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSvir_00350
TRPE
(NRULE_0143)
Anthranilate synthase component ISvir_28130
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSvir_20010
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseSvir_31690
Betaine biosynthesis (from glycine)(NFUNC_0050)
必須B
GSDMT
(NRULE_0181)
Glycine/sarcosine/dimethylglycine N-methyltransferaseSvir_27050
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseSvir_31730
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSvir_34800
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSvir_34810
ECTC
(NRULE_0188)
L-ectoine synthaseSvir_34790
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSvir_34780
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSvir_34800
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSvir_34810
 
ECTC
(NRULE_0188)
L-ectoine synthaseSvir_34790
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseSvir_09700
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseSvir_32980
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSvir_34120 Svir_34150
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSvir_34140
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSvir_10940
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSvir_34140
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSvir_34130
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSvir_35050
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSvir_35060
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinSvir_29430 Svir_29490
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinSvir_29480
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinSvir_29470 Svir_29420
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinSvir_29460
C
BCCT
(NRULE_0220)
BCCT family transporterSvir_31680 Svir_00590 Svir_01010 Svir_13950 Svir_23270

ゲノム配列情報

BioProject IDPRJNA20835
ローカスタグSVIR
INSDC entriesCP001683
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 4,308,349
遺伝子数 3,828
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of Saccharomonospora viridis type strain (P101). (Stand Genomic Sci. 2009) PMID: 21304650

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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