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Microbe : Hyphomonas neptunium

Microbe Description

NBRC No. 14232
Scientific name Hyphomonas neptunium
Synonymous name Hyphomicrobium neptunium
History IFO 14232 <- ATCC 15444 <- E. Leifson
Other culture collection No. ATCC 15444=BCRC 10690=DSM 5154=IFAM LE670=NCIMB 2023
Other No.
Reference
16980487
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. (J Bacteriol. 2006)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHNE_2417 HNE_0725
n-alkane hydroxylation(NFUNC_0008)
RequireA
CYP153
(NRULE_0041)
Cytochrome P450 CYP153HNE_2042
Participant 
RUBA
(NRULE_0039)
RubredoxinHNE_0571
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinHNE_0350 HNE_0143 HNE_2235
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHNE_2368 HNE_1789
TRPE
(NRULE_0143)
Anthranilate synthase component IHNE_1790
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHNE_0965
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBHNE_0992
ARSC1
(NRULE_0017)
Arsenate reductaseHNE_0991
Participant 
ARSH
(NRULE_0021)
ArsH proteinHNE_0990
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHNE_0091
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseHNE_0180
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseHNE_2313
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseHNE_3404
 
PHAP1
(NRULE_0374)
PhasinHNE_1026
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseHNE_1640
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseHNE_1639
ECTC
(NRULE_0188)
L-ectoine synthaseHNE_1641
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylaseHNE_1642
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseHNE_1640
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseHNE_1639
 
ECTC
(NRULE_0188)
L-ectoine synthaseHNE_1641
Mercury resistance(NFUNC_0005)
RequireA
MERA
(NRULE_0008)
Mercuric reductaseHNE_1691
Metal-binding protein(NFUNC_0105)
RequireF
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRHNE_3426
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseHNE_0176
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterHNE_1490

Genomic Overview

BioProject IDPRJNA15721
Locus_tagHNE
INSDC entriesCP000158
Sequence statusComplete
Current status
Contig number1
Size(bp) 3,705,021
Gene 3,505
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. (J Bacteriol. 2006) PMID: 16980487

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.1 MB 1.0 MB 714.7 KB 271.2 KB