Microbe : Hyphomonas neptunium

Microbe Description

NBRC No.	14232
Scientific name	Hyphomonas neptunium
Synonymous name	Hyphomicrobium neptunium
History	IFO 14232 <- ATCC 15444 <- E. Leifson
Other culture collection No.	ATCC 15444=BCRC 10690=DSM 5154=IFAM LE670=NCIMB 2023
Other No.
Reference	16980487 Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. (J Bacteriol. 2006)

Functional Potential >>Details


Type	Pattern	Component Gene		CDS
Alanine racemization(NFUNC_0063)
Require	A	ALR (NRULE_0228)	Alanine racemase	HNE_2417 HNE_0725
n-alkane hydroxylation(NFUNC_0008)
Require	A	CYP153 (NRULE_0041)	Cytochrome P450 CYP153	HNE_2042
Participant		RUBA (NRULE_0039)	Rubredoxin	HNE_0571
Participant		FDX1 (NRULE_0034)	Putative Rieske-type ferredoxin	HNE_0350 HNE_0143 HNE_2235
Anthranilate biosynthesis(NFUNC_0038)
Require	A	GLAT (NRULE_0142)	Glutamine amidotransferase	HNE_2368 HNE_1789
Require	A	TRPE (NRULE_0143)	Anthranilate synthase component I	HNE_1790
Aromatic azo compounds degradation(NFUNC_0073)
Require	A	AZOR (NRULE_0236)	FMN-dependent NADH-azoreductase	HNE_0965
Arsenical resistance(NFUNC_0004)
Require	D	ARSB2 (NRULE_0016)	Arsenite resistance protein ArsB	HNE_0992
Require	D	ARSC1 (NRULE_0017)	Arsenate reductase	HNE_0991
Participant		ARSH (NRULE_0021)	ArsH protein	HNE_0990
Bacitracin resistance(NFUNC_0022)
Require	A	UPPP (NRULE_0097)	Undecaprenyl-diphosphatase	HNE_0091
Bioplastic degradation(NFUNC_0015)
Require	A	PHAZ1 (NRULE_0023)	Intracellular poly(3-hydroxyalkanoate) depolymerase	HNE_0180
Bioplastic synthesis(NFUNC_0001)
Require	A	PHAC1 (NRULE_0010)	Poly(3-hydroxyalkanoate) polymerase	HNE_2313
Participant		PHAB (NRULE_0011)	Acetoacetyl-CoA reductase	HNE_3404
Participant		PHAP1 (NRULE_0374)	Phasin	HNE_1026
Ectoine biosynthesis(NFUNC_0056)
Require	A	ECTB (NRULE_0186)	Diaminobutyrate--2-oxoglutarate transaminase	HNE_1640
		ECTA (NRULE_0187)	L-2,4-diaminobutyric acid acetyltransferase	HNE_1639
		ECTC (NRULE_0188)	L-ectoine synthase	HNE_1641
Hydroxyectoine biosynthesis(NFUNC_0057)
Require	A	ECTD (NRULE_0189)	Ectoine hydroxylase	HNE_1642
Participant		ECTB (NRULE_0186)	Diaminobutyrate--2-oxoglutarate transaminase	HNE_1640
		ECTA (NRULE_0187)	L-2,4-diaminobutyric acid acetyltransferase	HNE_1639
		ECTC (NRULE_0188)	L-ectoine synthase	HNE_1641
Mercury resistance(NFUNC_0005)
Require	A	MERA (NRULE_0008)	Mercuric reductase	HNE_1691
Metal-binding protein(NFUNC_0105)
Require	F	SOXR (NRULE_0329)	Redox-sensitive transcriptional activator SoxR	HNE_3426
Phytic acid hydrolysis(NFUNC_0085)
Require	A	PHYT (NRULE_0258)	3-phytase	HNE_0176
Uptake of osmoprotectant(NFUNC_0061)
Require	C	BCCT (NRULE_0220)	BCCT family transporter	HNE_1490

Genomic Overview

BioProject ID	PRJNA15721
Locus_tag	HNE
INSDC entries	CP000158
Sequence status	Complete
Current status
Contig number	1
Size(bp)	3,705,021
Gene	3,505
Finishing goal
Assembly method
Coverage
Technology

Reference

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. (J Bacteriol. 2006) PMID: 16980487

Data Download

Genomic nucleotide sequence	Nucleotide sequence of the coding regions	Translation of the coding sequneces	List of genes / ORFs
FASTA gz	FASTA gz	FASTA gz	TSV uncompressed

1.1 MB	1.0 MB	714.7 KB	271.2 KB