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微生物 : Vibrio vulnificus

微生物株情報

NBRC番号 15645
学名 Vibrio vulnificus
別名(シノニム) Beneckea vulnifica
由来 IFO 15645 <- Hiroshima Univ. (K. Muroga, HUFP 5002) <- Oregon State Univ. (M. Nishibuchi)
他保存機関番号 ATCC 27562=BCRC 12905=CAIM 610=CCUG 13448=CCUG 16394=CIP 75.4=DSM 10143=JCM 3725=LMG 13545
他株番号
参考文献
23209214
Genome sequence of the human-pathogenic bacterium Vibrio vulnificus type strain ATCC 27562. (J Bacteriol. 2012)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseB736_19200 B736_00380
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseB736_12630
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseB736_10730
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseB736_17620
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseB736_15935
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseB736_15920
 
PHAP1
(NRULE_0374)
PhasinB736_15930
Chloramphenicol resistance(NFUNC_0025)
必須B
CAT4
(NRULE_0108)
Chloramphenicol acetyltransferaseB736_00995
Cyclodextrin biosynthesis(NFUNC_0076)
必須A
CGT
(NRULE_0243)
Cyclomaltodextrin glucanotransferaseB736_13820
Extracellular electron transfer system(NFUNC_0098)
必須A
NAPC
(NRULE_0333)
Multiheme c-type cytochromeB736_15950 B736_17025
MTRC
(NRULE_0334)
OmcA/MtrC family decaheme c-type cytochromeB736_17015
MTRA
(NRULE_0335)
MtrA/DmsE family decaheme c-type cytochromeB736_17010
MTRB
(NRULE_0336)
Outer membrane protein MtrB homologB736_17005
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseB736_04580
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinB736_13830 B736_19915
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinB736_19905 B736_13950 B736_18245 B736_20675
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRB736_17105
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRB736_12070
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRB736_05465
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRB736_04775
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinB736_19905 B736_20675 B736_13950 B736_18245
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinB736_19910
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinB736_19915
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseB736_13000 B736_09080
RIBA
(NRULE_0201)
GTP cyclohydrolase-2B736_14885 B736_02170 B736_09080
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDB736_09070
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseB736_09085
RIBE
(NRULE_0204)
Riboflavin synthaseB736_09075 B736_02900
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFB736_00775
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterB736_04920 B736_14965
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseB736_05995
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseB736_04415
SERC
(NRULE_0210)
Phosphoserine aminotransferaseB736_02520
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseB736_10540
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseB736_05850

ゲノム配列情報

BioProject IDPRJNA199800
ローカスタグB736
INSDC entriesNZ_AMQV01000000
ステータスWGS
解析状況
コンティグ数194
サイズ(bp) 4,327,239
遺伝子数 3,829
フィニッシングゴール
アセンブル方法SOAPdenovo v. 1.05
冗長度100.0x
シーケンス方法
  • Illumina HiSeq
参考文献
  • Genome sequence of the human-pathogenic bacterium Vibrio vulnificus type strain ATCC 27562. (J Bacteriol. 2012) PMID: 23209214

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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