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Microbe : Methylobacterium radiotolerans

Microbe Description

NBRC No. 15690
Scientific name Methylobacterium radiotolerans
Synonymous name Methylobacterium radiodura (sic)
Pseudomonas radiora
History IFO 15690 <- JCM 2831 <- IAM 12098 <- H. Ito & M. Iizuka, 0-1
Other culture collection No. ATCC 27329=DSM 1819=IAM 12098=JCM 2831=LMG 2269=NCIMB 10815
Other No. 0-1
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseMrad2831_4822 Mrad2831_3896
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AMrad2831_4082
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseMrad2831_1637 Mrad2831_3101
TRPE
(NRULE_0143)
Anthranilate synthase component IMrad2831_3102
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseMrad2831_2470
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseMrad2831_4469
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinMrad2831_1380
ARSC1
(NRULE_0017)
Arsenate reductaseMrad2831_1379
Participant 
ARSH
(NRULE_0021)
ArsH proteinMrad2831_1377
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseMrad2831_3134
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AMrad2831_4082
C
BLAC
(NRULE_0124)
Beta-lactamase class CMrad2831_5292
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseMrad2831_2955 Mrad2831_4365
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseMrad2831_6025 Mrad2831_4281
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseMrad2831_5071
B
PHAE
(NRULE_0012)
Poly(3-hydroxyalkanoate) polymerase PhaE subunitMrad2831_2399
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunitMrad2831_2400
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseMrad2831_5119
 
PHAP1
(NRULE_0374)
PhasinMrad2831_1910 Mrad2831_4356 Mrad2831_5600
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CMrad2831_5292
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class AMrad2831_4082
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinMrad2831_2893 Mrad2831_1743 Mrad2831_2328
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMrad2831_3097 Mrad2831_2331 Mrad2831_1756 Mrad2831_1096
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRMrad2831_3585 Mrad2831_2538
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRMrad2831_6071 Mrad2831_4064
J
SMTA
(NRULE_0009)
MetallothioneinMrad2831_5147
Metallothionein(NFUNC_0006)
RequireA
SMTA
(NRULE_0009)
MetallothioneinMrad2831_5147
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMrad2831_2331 Mrad2831_3097 Mrad2831_1096 Mrad2831_1756
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinMrad2831_2330
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinMrad2831_2328
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaMrad2831_0904
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaMrad2831_0905
Participant 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KMrad2831_0906
 
COBW
(NRULE_0007)
CobW/P47K family proteinMrad2831_0862 Mrad2831_4765 Mrad2831_3685 Mrad2831_3114 Mrad2831_2384
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AMrad2831_4082
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseMrad2831_0517
Participant 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein AMrad2831_0519
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BMrad2831_0518
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EMrad2831_0516
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseMrad2831_1600
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseMrad2831_1601
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeMrad2831_1151 Mrad2831_1486
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseMrad2831_1598

Genomic Overview

BioProject IDPRJNA18817
Locus_tagMRAD2831
INSDC entriesCP001001
Sequence statusComplete
Current status
Contig number9
Size(bp) 6,899,110
Gene 6,431
Finishing goal
Assembly method
Coverage
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.0 MB 1.7 MB 1.2 MB 528.0 KB