Rifam_00600
Rifam_00610 : CDS information
Location
| Organism | Amycolatopsis mediterranei |
|---|---|
| Strain | S699 |
| Entry name | Rifamycin |
| Contig | AF040570 |
| Start / Stop / Direction | 103,594 / 104,808 / + [in whole cluster] 103,594 / 104,808 / + [in contig] |
| Location | 103594..104808 [in whole cluster] 103594..104808 [in contig] |
| Type | CDS |
| Length | 1,215 bp (404 aa) |
Annotation
| Category | 4.1 transcriptional regulator |
|---|---|
| Product | putative LuxR family transcriptional regulator |
| Product (GenBank) | putative regulatory protein |
| Gene | |
| Gene (GenBank) | |
| EC number | |
| Keyword | |
| Note | |
| Note (GenBank) |
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| Reference |
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| Family/Domain |
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Sequence
>putative LuxR family transcriptional regulator [putative regulatory protein] MQRSCDTAGFLRRSASSWFNGRLDTGLHCARAAATGNRRESDELSQLARFWYVGLLIKAR DLDAGRRVLESAEADRGGAASDRMTAVEHNVRGSLLFAMGSVDDAMAEISTGLRIAERCG DRSLRPPSYVVLALGALRRADMRACRHFVDKLSDEALLGYFGQAPGAWVAAQAVEARSGV ESAASLIAGIVTNPVVLRQLLVSEPAAASWLVRACVKLGAHDLAKASAAESAALAAEQPE FSVIRGSALHAAGLLEQDAAKLHEAADIHPDRWCAASAREDLASLLTVRCSERDRTIRIL ESVLDTYTSVSATRDSARVVNKLREYGVRRGTTRTVECEGTVPHGLTNTEFAVAELVSQG HTNNEVGRQLFISRHTVAFHLKKVFQKMNLTSRVELAAAWKVFS
>putative LuxR family transcriptional regulator [putative regulatory protein] ATGCAGCGGTCCTGTGACACCGCTGGTTTCCTCCGCCGCTCGGCCTCGTCGTGGTTCAAC GGGCGGCTCGACACGGGGTTGCACTGTGCCAGGGCAGCGGCCACGGGCAACCGCCGGGAA TCCGACGAACTCAGCCAGCTGGCTCGGTTCTGGTACGTCGGGTTGCTGATCAAGGCCCGG GACCTCGACGCGGGCCGCCGGGTGCTCGAGTCGGCGGAGGCGGATCGGGGCGGGGCAGCC TCCGACCGCATGACCGCCGTCGAGCACAACGTGCGGGGCAGCCTGCTGTTCGCCATGGGC AGCGTCGACGACGCGATGGCGGAAATCAGCACCGGGCTGCGGATCGCCGAGCGCTGTGGT GACCGGTCGCTGCGGCCGCCCAGTTACGTCGTGCTGGCGCTGGGTGCCCTTCGCCGCGCG GACATGCGGGCGTGCCGCCACTTCGTCGACAAGCTGTCGGACGAAGCGCTGCTCGGTTAC TTCGGGCAGGCGCCGGGAGCGTGGGTGGCCGCGCAGGCCGTGGAAGCCCGCAGCGGCGTG GAGAGCGCGGCGAGCCTGATCGCCGGGATCGTGACGAACCCGGTGGTGCTCCGGCAGCTG CTGGTGTCGGAACCGGCGGCGGCGTCCTGGCTGGTCCGCGCGTGCGTCAAGCTCGGCGCG CACGACCTGGCGAAGGCTTCGGCGGCGGAGTCCGCCGCGCTGGCCGCCGAGCAGCCGGAG TTCAGCGTGATCCGCGGCTCCGCCCTGCACGCGGCGGGCCTGCTGGAGCAGGACGCGGCC AAGCTCCACGAGGCGGCCGACATCCACCCCGACCGCTGGTGCGCGGCCTCGGCGCGCGAG GACCTGGCGAGCCTGCTGACCGTCCGGTGTTCCGAACGCGACCGGACGATCAGGATCCTC GAGTCGGTCCTGGACACGTACACGTCGGTGAGCGCCACCCGCGACTCGGCCCGGGTGGTG AACAAGCTCCGCGAGTACGGCGTCCGCCGCGGCACGACCCGGACGGTCGAGTGCGAAGGC ACCGTCCCGCACGGGCTGACGAACACGGAGTTCGCGGTGGCGGAGCTGGTGAGCCAGGGC CACACCAACAACGAGGTGGGCCGGCAGCTGTTCATCTCCCGGCACACGGTGGCGTTCCAC CTGAAGAAGGTGTTCCAGAAGATGAACCTCACCTCCAGGGTCGAGCTGGCGGCGGCGTGG AAGGTGTTCTCGTAG
Feature
| BLASTP Database:UniProtKB:2011_09 |
|
|---|---|
| InterPro Database:interpro:38.0 |
IPR000792 Transcription regulator LuxR, C-terminal (Domain)
IPR011990 Tetratricopeptide-like helical (Domain)
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding (Domain)
IPR016032 Signal transduction response regulator, C-terminal effector (Domain)
|
| SignalP | No significant hit |
| TMHMM | No significant hit |
![[339-404] 19.679 PS50043](../../img/M.gif "[339-404] 19.679 PS50043"){kind=small}
![[346-360] 2.7e-08 PR00038](../../img/F.gif "[346-360] 2.7e-08 PR00038"){kind=small}
![[343-400] 2.6e-16 SM00421](../../img/R.gif "[343-400] 2.6e-16 SM00421"){kind=small}
![[345-398] 2.9e-15 PF00196](../../img/H.gif "[345-398] 2.9e-15 PF00196"){kind=small}
![[83-283] 8.9e-14 G3DSA:1.25.40.10](../../img/X2.gif "[83-283] 8.9e-14 G3DSA:1.25.40.10"){kind=small}
![[324-400] 2e-14 SSF46894](../../img/B.gif "[324-400] 2e-14 SSF46894"){kind=small}
