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微生物 : Sphingomonas echinoides

微生物株情報

NBRC番号 15742
学名 Sphingomonas echinoides
別名（シノニム） Pseudomonas echinoides
由来 IFO 15742 <- ATCC 14820 <- A. Heumann
他保存機関番号 ATCC 14820=CCUG 2870=CIP 103301=DSM 1805=DSM 50409=JCM 10637=LMG 7462=NCIB 9420=NCIMB 9420=NRRL B-3126
他株番号
参考文献
8068543
Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Busing, Doll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., respectively. (Int J Syst Bacteriol. 1994)
10425767
Reclassification of Pseudomonas echinoides Heumann 1962, 343AL, in the genus Sphingomonas as Sphingomonas echinoides comb. nov. (Int J Syst Bacteriol. 1999)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSechA1_010100006325
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153SechA1_010100015100
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSechA1_010100008042 SechA1_010100004978 SechA1_010100004928 SechA1_010100000565 SechA1_010100005008 SechA1_010100005518 SechA1_010100006128 SechA1_010100006910 SechA1_010100004983
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSechA1_010100017463
TRPE
(NRULE_0143)
Anthranilate synthase component ISechA1_010100017473
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinSechA1_010100014185
ARSC1
(NRULE_0017)
Arsenate reductaseSechA1_010100009988 SechA1_010100014190
B
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinSechA1_010100014185
ARSC2
(NRULE_0018)
Arsenate reductaseSechA1_010100009993
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSechA1_010100009983
ARSC1
(NRULE_0017)
Arsenate reductaseSechA1_010100009988 SechA1_010100014190
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSechA1_010100009983
ARSC2
(NRULE_0018)
Arsenate reductaseSechA1_010100009993
任意 
ARSH
(NRULE_0021)
ArsH proteinSechA1_010100009973
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSechA1_010100013401 SechA1_010100010193
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSechA1_010100016689
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseSechA1_010100002001
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSechA1_010100013746
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSechA1_010100013831
 
PHAP1
(NRULE_0374)
PhasinSechA1_010100013751
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSechA1_010100016369
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRSechA1_010100010013
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRSechA1_010100013956
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSechA1_010100016369
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSechA1_010100016374
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSechA1_010100016379

ゲノム配列情報

BioProject IDPRJNA169543
ローカスタグSECHA1
INSDC entriesNZ_AHIR01000000
ステータスWGS
解析状況
コンティグ数64
サイズ(bp) 4,180,007
遺伝子数 3,912
フィニッシングゴール
アセンブル方法ABySS v. 1.3.1; GS Assembler v. 2.5.3
冗長度370x
シーケンス方法
  • Illumina GA IIx
  • 454 GS FLX Titanium
参考文献
  • Draft genome sequence of Sphingomonas echinoides ATCC 14820. (J Bacteriol. 2012) PMID: 22408244

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.2 MB 1.2 MB 786.4 KB 324.4 KB