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Microbe : Cystobacter fuscus

Microbe Description

NBRC No. 100088
Scientific name Cystobacter fuscus
Synonymous name Not assigned
History DSM 2262 <- ATCC 25194 <- H.D. McCurdy M29 (Polyangium fuscum)
Other culture collection No. ATCC 25194, DSM 2262
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseD187_001330 D187_005574
Alginate degradation(NFUNC_0062)
RequireB
ALY
(NRULE_0227)
Alginate lyaseD187_001810
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseD187_005428
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseD187_006310 D187_003622
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AD187_001958
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseD187_003074 D187_002831
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseD187_001309
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AD187_001958
C
BLAC
(NRULE_0124)
Beta-lactamase class CD187_001949
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseD187_000579 D187_006031
Bleomycin resistance(NFUNC_0021)
RequireA
BLE
(NRULE_0096)
Bleomycin resistance proteinD187_001341
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CD187_001949
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class AD187_001958
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseD187_001846
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinD187_010045 D187_008369
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinD187_005897 D187_004155 D187_004190 D187_004629 D187_007914
Milk clotting(NFUNC_0072)
RequireA
MCP
(NRULE_0235)
Milk-clotting proteaseD187_003619 D187_009210 D187_003618
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinD187_004629 D187_005897 D187_004155 D187_004190 D187_007914
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinD187_008368
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinD187_008369
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseD187_000930
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseD187_006298
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseD187_007692 D187_001625
PANC
(NRULE_0118)
Pantothenate synthetaseD187_006297
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AD187_001958
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseD187_009239
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseD187_002724
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BD187_002725
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DD187_002723
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ED187_002722
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein FD187_002726
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseD187_004605
RIBA
(NRULE_0201)
GTP cyclohydrolase-2D187_004528 D187_009907 D187_004605
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDD187_004612
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseD187_004604
RIBE
(NRULE_0204)
Riboflavin synthaseD187_004606
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFD187_006610
Streptogramin resistance(NFUNC_0027)
RequireB
VGB
(NRULE_0114)
Virginiamycin B lyaseD187_005554
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseD187_003622 D187_006310
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseD187_010280
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseD187_010020 D187_002082
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeD187_010281 D187_000195
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseD187_007926

Genomic Overview

BioProject IDPRJNA177202
Locus_tag
INSDC entriesANAH02000000
Sequence statusWGS
Current status
Contig number76
Size(bp) 12,282,374
Gene 10,512
Finishing goal
Assembly methodCLC NGS Cell v. wb 6.0
Coverage741.5x
Technology
  • Illumina HiSeq
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
3.5 MB 3.3 MB 2.2 MB 794.5 KB