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微生物 : Gordonia araii

微生物株情報

NBRC番号 100433
学名 Gordonia araii
別名(シノニム) 該当データなし
由来 Chiba Univ. (Y. Mikami, IFM 10211)
他保存機関番号 IFM 10211=DSM 44811=JCM 12131=CCUG 53883=CIP 109346
他株番号
参考文献
16902014
Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. (Int J Syst Evol Microbiol. 2006)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOARA_021_01480
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GOARA_078_00570
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOARA_047_00220
任意 
RUBA
(NRULE_0039)
RubredoxinGOARA_047_00200 GOARA_047_00210
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOARA_048_00620 GOARA_056_00090 GOARA_065_00230 GOARA_078_00560 GOARA_089_00160
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOARA_004_00430
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AGOARA_045_00350
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOARA_035_00060
TRPE
(NRULE_0143)
Anthranilate synthase component IGOARA_052_00130
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOARA_012_00740
ARSC1
(NRULE_0017)
Arsenate reductaseGOARA_067_00490
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOARA_036_00940
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AGOARA_045_00350
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseGOARA_045_00340
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOARA_043_00300
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOARA_043_00290
ECTC
(NRULE_0188)
L-ectoine synthaseGOARA_043_00310
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOARA_064_01990
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGOARA_043_00680
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOARA_043_00300
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOARA_043_00290
 
ECTC
(NRULE_0188)
L-ectoine synthaseGOARA_043_00310
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOARA_061_00680
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOARA_062_00330 GOARA_075_00080
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOARA_043_00500 GOARA_062_00300
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOARA_038_00050
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOARA_062_00300 GOARA_043_00500
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOARA_043_00510
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AGOARA_045_00350
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOARA_004_00430
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOARA_082_00320
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOARA_082_00310
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOARA_067_00050
E
OPUE
(NRULE_0222)
Sodium/proline symporterGOARA_060_00020
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOARA_064_00990
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOARA_064_00940

ゲノム配列情報

BioProject IDPRJNA71333
ローカスタグGOARA
INSDC entriesBAEE00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数98
サイズ(bp) 3,906,554
遺伝子数 3,796
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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