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微生物 : Deinococcus proteolyticus

微生物株情報

NBRC番号 101906
学名 Deinococcus proteolyticus
別名(シノニム) 該当データなし
由来 IAM 12141 <- NHL (M. Kobatake, MRP)
他保存機関番号 ATCC 35074=CCM 2703=DSM 20540=HAMBI 2066=IAM 12141=JCM 6276=NBRC 15345=UWO 1056=VKM Ac-1939
他株番号 MRP
参考文献
9103641
Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. (Int J Syst Bacteriol. 1997)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseDeipr_0733
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseDeipr_0852
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseDeipr_0362
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseDeipr_1927
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseDeipr_0295 Deipr_2109
TRPE
(NRULE_0143)
Anthranilate synthase component IDeipr_2110
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseDeipr_0453
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseDeipr_1394
Chloramphenicol resistance(NFUNC_0025)
必須A
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseDeipr_1239
Kanamycin resistance(NFUNC_0052)
必須C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseDeipr_1927
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseDeipr_0852
Macrolide antibiotic resistance(NFUNC_0045)
必須D
ERE
(NRULE_0168)
Erythromycin esteraseDeipr_0276
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinDeipr_1327 Deipr_2610 Deipr_1119
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRDeipr_1050
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinDeipr_2610 Deipr_1327 Deipr_1119
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinDeipr_2611
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseDeipr_0757
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseDeipr_0309
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseDeipr_0570
PANC
(NRULE_0118)
Pantothenate synthetaseDeipr_0827
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseDeipr_2619
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinDeipr_0160 Deipr_0604 Deipr_0889
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseDeipr_1850
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytaseDeipr_0854
Streptomycin resistance(NFUNC_0054)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseDeipr_0362
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseDeipr_1927
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterDeipr_2544
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSDeipr_0165
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTDeipr_0166

ゲノム配列情報

BioProject IDPRJNA41911
ローカスタグDEIPR
INSDC entriesCP002536
ステータスComplete
解析状況Finished
コンティグ数5
サイズ(bp) 2,886,836
遺伝子数 2,656
フィニッシングゴールFinished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • 454-Titanium
  • Illumina
参考文献
  • Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). (Stand Genomic Sci. 2012) PMID: 22768367

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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