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Microbe : Rhizobium sp.

Microbe Description

NBRC No. 101917
Scientific name Rhizobium sp.
Synonymous name Not assigned
History Univ. Gen&egrave<-ve (W.J. Deakin, NGR234)
Other culture collection No.
Other No. NGR234
Reference
10188270
Rhizobium sp. strain NGR234 and R. fredii USDA257 share exceptionally broad, nested host ranges. (Mol Plant Microbe Interact. 1999)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseNGR_c08780 NGR_b07050
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseNGR_c02420
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseNGR_c23510
TRPE
(NRULE_0143)
Anthranilate synthase component INGR_c23510
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseNGR_c30820
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseNGR_c11680
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseNGR_c36660
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CNGR_c32650
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseNGR_c06990 NGR_b04630
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseNGR_c33730
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseNGR_b03370
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseNGR_c14000
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseNGR_c32710
 
PHAP1
(NRULE_0374)
PhasinNGR_c03360 NGR_c13240
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CNGR_c32650
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseNGR_b05770
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinNGR_c33090 NGR_a02170 NGR_a03670 NGR_c24710 NGR_b11800 NGR_b16970 NGR_b18040 NGR_b20260 NGR_b23110 NGR_c03140 NGR_b11240 NGR_c25320 NGR_c29860
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNGR_c29840 NGR_c19550 NGR_c03100
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRNGR_b08420 NGR_b07380 NGR_b12430
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRNGR_c16780
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNGR_c19550 NGR_c29840 NGR_c03100
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinNGR_c29850
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinNGR_c29860
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaNGR_c20120
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaNGR_c20110
Participant 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KNGR_c20100
 
COBW
(NRULE_0007)
CobW/P47K family proteinNGR_c18200 NGR_c27310 NGR_c29210
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainNGR_a00880 NGR_a01120
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainNGR_a01110 NGR_a00870
VNFH
(NRULE_0353)
Nitrogenase reductaseNGR_a01130 NGR_a00890
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseNGR_b20090
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b16350 NGR_b07640 NGR_b14750 NGR_b17090
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_b07390 NGR_c26310 NGR_c26150 NGR_c04870 NGR_b23420
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b15340 NGR_c26320 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_b12550 NGR_b11380 NGR_b08230 NGR_b07090
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_b17040 NGR_c15230 NGR_c25600 NGR_c12650 NGR_b20100
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseNGR_b03280
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BNGR_b03270
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ENGR_b03300
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseNGR_b17370
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseNGR_b11110
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeNGR_b11120 NGR_c28990
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseNGR_a02090
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseNGR_a02100
Uptake of osmoprotectant(NFUNC_0061)
RequireB
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinNGR_b23310 NGR_a01540
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinNGR_a01530 NGR_b23300
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinNGR_b23290 NGR_a01520
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinNGR_a01510 NGR_b23320
C
BCCT
(NRULE_0220)
BCCT family transporterNGR_c26260

Genomic Overview

BioProject IDPRJNA21101
Locus_tag
INSDC entriesCP001389
Sequence statusComplete
Current status
Contig number3
Size(bp) 6,891,900
Gene 6,366
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems. (Appl Environ Microbiol. 2009) PMID: 19376903

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.0 MB 1.8 MB 1.2 MB 533.0 KB