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Microbe : Alteromonas macleodii

Microbe Description

NBRC No. 102226
Scientific name Alteromonas macleodii
Synonymous name Not assigned
History IAM 12920 <- ATCC 27126 <- P. Baumann, 107
Other culture collection No. ATCC 27126=CCUG 16128=CIP 103198=DSM 6062=IAM 12920=LMG 2843=NCMB 1963
Other No. 107
Reference
15023977
Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii. (Int J Syst Evol Microbiol. 2004)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseMASE_02175
Alginate degradation(NFUNC_0062)
RequireB
ALY
(NRULE_0227)
Alginate lyaseMASE_04185 MASE_04170
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseMASE_01660 MASE_06475
TRPE
(NRULE_0143)
Anthranilate synthase component IMASE_06480
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseMASE_10465
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBMASE_14605
ARSC1
(NRULE_0017)
Arsenate reductaseMASE_10215
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBMASE_14605
ARSC2
(NRULE_0018)
Arsenate reductaseMASE_14595
Participant 
ARSH
(NRULE_0021)
ArsH proteinMASE_14600
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseMASE_02985
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseMASE_13425
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseMASE_06475 MASE_01660
DHPS
(NRULE_0144)
Dihydropteroate synthaseMASE_08685
FOLA
(NRULE_0147)
Dihydrofolate reductaseMASE_02375
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseMASE_06420 MASE_02975
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseMASE_17345 MASE_02980
FOLC
(NRULE_0160)
Bifunctional protein FolCMASE_11665
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IMASE_09510
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseMASE_07925
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseMASE_09260
Metal-binding protein(NFUNC_0105)
RequireC
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMASE_08265 MASE_10780
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRMASE_13445
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRMASE_12895
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMASE_08265 MASE_10780
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinMASE_10775
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseMASE_07690
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseMASE_15510
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BMASE_15505
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EMASE_15520
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseMASE_12415
RIBA
(NRULE_0201)
GTP cyclohydrolase-2MASE_12415 MASE_00675
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDMASE_12425
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseMASE_12410
RIBE
(NRULE_0204)
Riboflavin synthaseMASE_12420
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFMASE_12640
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterMASE_00360 MASE_08405 MASE_15610
E
OPUE
(NRULE_0222)
Sodium/proline symporterMASE_05740 MASE_08755
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseMASE_03575
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseMASE_11690
SERC
(NRULE_0210)
Phosphoserine aminotransferaseMASE_10110
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseMASE_03180
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseMASE_03230

Genomic Overview

BioProject IDPRJNA29793
Locus_tag
INSDC entriesCP003841
Sequence statusComplete
Current status
Contig number1
Size(bp) 4,653,851
Gene 3,872
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. (ISME J. 2008) PMID: 18670397
  • Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T. (J Bacteriol. 2012) PMID: 23209244

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.4 MB 1.2 MB 866.4 KB 296.9 KB