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微生物 : Actinoplanes missouriensis

微生物株情報

NBRC番号 102363
学名 Actinoplanes missouriensis
別名(シノニム) 該当データなし
由来 Univ. Yamanashi (M. Hayakawa, YU H01) <- KCC A-0121 <- Univ. North Carolina (J.N. Couch, 431)
他保存機関番号 ATCC 14538=CBS 188.64=DSM 43046=JCM 3121=NRRL B-3342=NBRC 13243=BCRC 13335=CGMCC 4.1488=IFM 1250=KCTC 1780=NBIMCC 2232=NCIMB 12654=VTT E-82151
他株番号 YU H01=431=KCC A-0121=IMET 9249
参考文献
23407331
Complete genome sequence of the motile actinomycete Actinoplanes missouriensis 431(T) (= NBRC 102363(T)). (Stand Genomic Sci. 2012)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseAMIS_6660
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseAMIS_28610
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinAMIS_16050 AMIS_14230 AMIS_1510 AMIS_57270 AMIS_70000 AMIS_38510 AMIS_19170 AMIS_16280
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseAMIS_37470
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseAMIS_23580 AMIS_27610
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須C
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseAMIS_30840 AMIS_47970
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AAMIS_31990
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseAMIS_480
TRPE
(NRULE_0143)
Anthranilate synthase component IAMIS_15620
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseAMIS_41350
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AAMIS_31990
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseAMIS_58840 AMIS_30650
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseAMIS_46640
Gentamicin resistance(NFUNC_0053)
必須A
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseAMIS_30840 AMIS_47970
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseAMIS_27610 AMIS_23580
Kanamycin resistance(NFUNC_0052)
必須B
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseAMIS_30840 AMIS_47970
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseAMIS_27610 AMIS_23580
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseAMIS_74790
D
ERE
(NRULE_0168)
Erythromycin esteraseAMIS_48120 AMIS_42750
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseAMIS_22140
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinAMIS_52800 AMIS_24870 AMIS_4900
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAMIS_24890 AMIS_66080
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRAMIS_80050
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAMIS_24890 AMIS_66080
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinAMIS_24880
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseAMIS_77760
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseAMIS_13480
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseAMIS_63930
PANC
(NRULE_0118)
Pantothenate synthetaseAMIS_77770
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AAMIS_31990
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytaseAMIS_1520
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseAMIS_61940
RIBA
(NRULE_0201)
GTP cyclohydrolase-2AMIS_61940 AMIS_13360 AMIS_50940 AMIS_60390
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDAMIS_61960
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseAMIS_61930
RIBE
(NRULE_0204)
Riboflavin synthaseAMIS_61950
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFAMIS_69560
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseAMIS_63890
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseAMIS_63880
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeAMIS_48070 AMIS_63900 AMIS_60130
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseAMIS_54560
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseAMIS_10890
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseAMIS_74340
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterAMIS_49830
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSAMIS_62860
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTAMIS_62850

ゲノム配列情報

BioProject IDPRJDA29027
ローカスタグAMIS
INSDC entriesAP012319
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 8,773,466
遺伝子数 8,125
フィニッシングゴール
アセンブル方法phrap v. 0.020425.c
冗長度8x
シーケンス方法
  • Sanger ABI 3730
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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