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Microbe : Staphylococcus saprophyticus subsp. saprophyticus

Microbe Description

NBRC No. 102446
Scientific name Staphylococcus saprophyticus subsp. saprophyticus
Synonymous name Staphylococcus saprophyticus
History IAM 12452 <- Sanraku-Ocean Co., Ltd. (K. Kouno) <- NCIB 8711 <- NCTC 7292 <- S.T. Cowan, S-41
Other culture collection No. ATCC 15305=ATCC 19701=BCRC 10786=CCM 883=CCUG 3706=CECT 235=CIP 76.125=DSM 20229=IAM 12452=JCM 2427=LMG 13350=MTCC 6155=NCAIM B.01067=NCCB 73011=NCFB 948=NCIB 8711=NCIMB 8711=NCTC 7292=NRRL B-14751
Other No.
Reference
14908038
Staphylococci and their classification. (J Gen Microbiol. 1951)
16135568
Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection. (Proc Natl Acad Sci U S A. 2005)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseSSP0807
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseSSP1924
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASSP2186
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseSSP0721
Aromatic azo compounds degradation(NFUNC_0073)
RequireB
AZR
(NRULE_0237)
NADPH azoreductaseSSP2154
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinSSP2383 SSPP115
ARSC2
(NRULE_0018)
Arsenate reductaseSSPP114 SSP1633
Participant 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseSSPP118
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDSSPP119
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSSP2035
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASSP2186
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseSSP0196
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBSSP1926
Metal-binding protein(NFUNC_0105)
RequireC
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSSP0632
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSSP0632
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSSP0633
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseSSP0933
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSSP0154
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSSP0153 SSP0246
PANC
(NRULE_0118)
Pantothenate synthetaseSSP0155
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASSP2186
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseSSP1924
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinSSP0453 SSP0993
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinSSP0452 SSP0454
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinSSP0451
C
BCCT
(NRULE_0220)
BCCT family transporterSSP0193 SSP0323 SSP0701 SSP1409
E
OPUE
(NRULE_0222)
Sodium/proline symporterSSP0889 SSP0399
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSSP2237
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSSP2236

Genomic Overview

BioProject IDPRJNA15596
Locus_tagSSP
INSDC entriesAP008934
Sequence statusComplete
Current status
Contig number3
Size(bp) 2,577,899
Gene 2,514
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection. (Proc Natl Acad Sci U S A. 2005) PMID: 16135568

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
775.3 KB 660.0 KB 462.5 KB 191.0 KB