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微生物 : Salinispora tropica

微生物株情報

NBRC番号 105044
学名 Salinispora tropica
別名(シノニム) 該当データなし
由来 JCM 13857 <- DSM 44818 <- P.R. Jensen, CNB-440
他保存機関番号 ATCC BAA-916=BCRC 16822=CIP 108943=DSM 44818=JCM 13857
他株番号 CNB-440
参考文献
16166663
Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. (Int J Syst Evol Microbiol. 2005)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseStrop_3857
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseStrop_0641
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AStrop_1457
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseStrop_0049
TRPE
(NRULE_0143)
Anthranilate synthase component IStrop_3175
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseStrop_2164
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AStrop_1457
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseStrop_1639
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseStrop_4374
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseStrop_0814
D
ERE
(NRULE_0168)
Erythromycin esteraseStrop_2296 Strop_3666
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinStrop_2544 Strop_2547 Strop_4220 Strop_2402
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinStrop_2545
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRStrop_1494 Strop_4471
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinStrop_2545
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinStrop_2546
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AStrop_1457
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseStrop_2713
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentStrop_2674 Strop_4069
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinStrop_3293 Strop_2672 Strop_2209 Strop_1655 Strop_1330 Strop_3110 Strop_3081
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseStrop_2695 Strop_4506 Strop_4048 Strop_2668 Strop_0693
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseStrop_1877
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Strop_2559 Strop_1877
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDStrop_1874
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseStrop_1878
RIBE
(NRULE_0204)
Riboflavin synthaseStrop_1875
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFStrop_1379
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseStrop_0641
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseStrop_3543 Strop_3271
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseStrop_3544 Strop_0864
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterStrop_3426
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSStrop_1790
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTStrop_1791

ゲノム配列情報

BioProject IDPRJNA16342
ローカスタグ
INSDC entriesCP000667
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 5,183,331
遺伝子数 4,536
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. (Proc Natl Acad Sci U S A. 2007) PMID: 17563368
  • Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine. (Proc Natl Acad Sci U S A. 2009) PMID: 19590008

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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