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Microbe : Austwickia chelonae

Microbe Description

NBRC No. 105200
Scientific name Austwickia chelonae
Synonymous name Dermatophilus chelonae
History JCM 9706 <- CIP 104541 <- A.M. Masters, W16
Other culture collection No. JCM 9706=ATCC 51576=CCUG 47447=DSM 44178=CIP 104541
Other No. W16
Reference
7857807
Dermatophilus chelonae sp. nov., isolated from chelonids in Australia. (Int J Syst Bacteriol. 1995)
21282898
Mobilicoccus pelagius gen. nov., sp. nov. and Piscicoccus intestinalis gen. nov., sp. nov., two new members of the family Dermatophilaceae, and reclassification of Dermatophilus chelonae (Masters et al. 1995) as Austwickia chelonae gen. nov., comb. nov. (J Gen Appl Microbiol. 2010)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseAUCHE_08_02800 AUCHE_05_03560
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseAUCHE_18_00910 AUCHE_16_00230
TRPE
(NRULE_0143)
Anthranilate synthase component IAUCHE_05_01520
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseAUCHE_05_00400
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseAUCHE_21_00530
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseAUCHE_05_04260
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinAUCHE_09_00010 AUCHE_08_00800 AUCHE_09_00040
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAUCHE_09_00030
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRAUCHE_22_00130
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAUCHE_09_00030
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinAUCHE_09_00020
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseAUCHE_05_00860
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseAUCHE_05_00850
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseAUCHE_16_01130
PANC
(NRULE_0118)
Pantothenate synthetaseAUCHE_05_00840
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseAUCHE_08_00400
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseAUCHE_08_00410
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeAUCHE_02_00130 AUCHE_05_01990
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseAUCHE_02_00180
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseAUCHE_08_00860
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseAUCHE_08_00850
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterAUCHE_21_00540 AUCHE_03_01630
E
OPUE
(NRULE_0222)
Sodium/proline symporterAUCHE_16_02110
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSAUCHE_05_04170
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTAUCHE_05_04150

Genomic Overview

BioProject IDPRJDB94
Locus_tagAUCHE
INSDC entriesBAGZ00000000
Sequence statusWGS
Current statusHigh-Quality Draft
Contig number33
Size(bp) 3,541,124
Gene 3,048
Finishing goalNoncontiguous Finished
Assembly methodNewbler v. 2.6
Coverage
Technology
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.0 MB 974.6 KB 652.3 KB 238.1 KB