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Microbe : Gordonia soli

Microbe Description

NBRC No. 108243
Scientific name Gordonia soli
Synonymous name Not assigned
History IFM 10767 <- DSM 44995 <- A.L. Jones <- F.T. Shen, CC-AB07
Other culture collection No. IFM 10767=JCM 14298=BCRC 16810=DSM 44995
Other No. CC-AB07
Reference
17082398
Gordonia soli sp. nov., a novel actinomycete isolated from soil. (Int J Syst Evol Microbiol. 2006)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseGS4_28_01500
n-alkane hydroxylation(NFUNC_0008)
RequireB
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGS4_26_00660 GS4_03_00940
Participant 
RUBA
(NRULE_0039)
RubredoxinGS4_03_00960 GS4_03_00950
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGS4_15_01090 GS4_05_00460 GS4_43_00080 GS4_45_00220 GS4_30_00250 GS4_25_00850 GS4_16_00410
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseGS4_06_00470
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseGS4_23_01110
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseGS4_26_01550
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGS4_33_01310
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireC
CHOX
(NRULE_0178)
Choline oxidaseGS4_36_00290
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGS4_20_00920
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGS4_20_00910
ECTC
(NRULE_0188)
L-ectoine synthaseGS4_20_00930
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseGS4_15_00350
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylaseGS4_07_00760
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGS4_20_00920
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGS4_20_00910
 
ECTC
(NRULE_0188)
L-ectoine synthaseGS4_20_00930
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGS4_02_01310
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGS4_05_01620 GS4_24_00180 GS4_05_01590 GS4_17_00590
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGS4_24_00150 GS4_05_01610
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGS4_17_00340
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGS4_05_01610 GS4_24_00150
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGS4_05_01600
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGS4_01_00140 GS4_06_00360
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGS4_08_00740 GS4_07_01620 GS4_03_01720 GS4_16_00170 GS4_11_00390 GS4_22_00110
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGS4_45_00220 GS4_15_01090 GS4_05_00460 GS4_25_00850 GS4_30_00250 GS4_43_00080 GS4_16_00410
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGS4_07_01390 GS4_06_00420 GS4_14_01610 GS4_15_01150 GS4_15_01060 GS4_34_00350
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseGS4_23_01110
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGS4_30_00700
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGS4_30_00800
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGS4_30_00690
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGS4_32_01300
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGS4_32_01290
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterGS4_17_00270 GS4_36_00270
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGS4_19_00350
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGS4_19_00300

Genomic Overview

BioProject IDPRJDB470
Locus_tagGS4
INSDC entriesBANX00000000
Sequence statusWGS
Current statusHigh-Quality Draft
Contig number60
Size(bp) 5,375,815
Gene 4,907
Finishing goalNoncontiguous Finished
Assembly methodNewbler v. 2.6
Coverage
Technology
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.5 MB 1.5 MB 991.6 KB 355.9 KB