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微生物 : Gordonia soli

微生物株情報

NBRC番号 108243
学名 Gordonia soli
別名(シノニム) 該当データなし
由来 IFM 10767 <- DSM 44995 <- A.L. Jones <- F.T. Shen, CC-AB07
他保存機関番号 IFM 10767=JCM 14298=BCRC 16810=DSM 44995
他株番号 CC-AB07
参考文献
17082398
Gordonia soli sp. nov., a novel actinomycete isolated from soil. (Int J Syst Evol Microbiol. 2006)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGS4_28_01500
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGS4_26_00660 GS4_03_00940
任意 
RUBA
(NRULE_0039)
RubredoxinGS4_03_00960 GS4_03_00950
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGS4_15_01090 GS4_05_00460 GS4_43_00080 GS4_45_00220 GS4_30_00250 GS4_25_00850 GS4_16_00410
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseGS4_06_00470
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGS4_23_01110
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseGS4_26_01550
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGS4_33_01310
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGS4_36_00290
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGS4_20_00920
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGS4_20_00910
ECTC
(NRULE_0188)
L-ectoine synthaseGS4_20_00930
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGS4_15_00350
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGS4_07_00760
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGS4_20_00920
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGS4_20_00910
 
ECTC
(NRULE_0188)
L-ectoine synthaseGS4_20_00930
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGS4_02_01310
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGS4_05_01620 GS4_24_00180 GS4_05_01590 GS4_17_00590
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGS4_24_00150 GS4_05_01610
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGS4_17_00340
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGS4_05_01610 GS4_24_00150
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGS4_05_01600
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGS4_01_00140 GS4_06_00360
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGS4_08_00740 GS4_07_01620 GS4_03_01720 GS4_16_00170 GS4_11_00390 GS4_22_00110
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGS4_45_00220 GS4_15_01090 GS4_05_00460 GS4_25_00850 GS4_30_00250 GS4_43_00080 GS4_16_00410
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGS4_07_01390 GS4_06_00420 GS4_14_01610 GS4_15_01150 GS4_15_01060 GS4_34_00350
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGS4_23_01110
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGS4_30_00700
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGS4_30_00800
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGS4_30_00690
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGS4_32_01300
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGS4_32_01290
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGS4_17_00270 GS4_36_00270
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGS4_19_00350
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGS4_19_00300

ゲノム配列情報

BioProject IDPRJDB470
ローカスタグGS4
INSDC entriesBANX00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数60
サイズ(bp) 5,375,815
遺伝子数 4,907
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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