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Microbe : Actinosynnema mirum

Microbe Description

NBRC No. 14064
Scientific name Actinosynnema mirum
Synonymous name Not assigned
History IFO 14064 <- KCC A-0225 <- IMRU 3971 <- T. Hasegawa, 101
Other culture collection No. ATCC 29888=DSM 43827=JCM 3225=NRRL B-12336=VKM Ac-843
Other No. 101=IMRU 3971=KCC A-0225
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseAmir_6556
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseAmir_3045
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseAmir_0803
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseAmir_2164
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AAmir_3962
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseAmir_5650 Amir_0020
TRPE
(NRULE_0143)
Anthranilate synthase component IAmir_5704
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseAmir_1069
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseAmir_3522
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AAmir_3962
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseAmir_3959
Hygromycin resistance(NFUNC_0055)
RequireA
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseAmir_2164
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseAmir_3498
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinAmir_1951 Amir_5898 Amir_1948
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAmir_2682 Amir_1950 Amir_2655
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRAmir_5717
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAmir_2655 Amir_2682 Amir_1950
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinAmir_1949
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinAmir_0748
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AAmir_3962
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseAmir_0803
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseAmir_5113
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseAmir_5112
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeAmir_5114 Amir_6067
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseAmir_6073
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseAmir_0371
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseAmir_0370
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterAmir_0044
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSAmir_2108
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTAmir_2109

Genomic Overview

BioProject IDPRJNA19705
Locus_tagAMIR
INSDC entriesCP001630
Sequence statusComplete
Current status
Contig number1
Size(bp) 8,248,144
Gene 6,916
Finishing goal
Assembly methodNewbler version 1.1.02.15, Phrap
Coverage
Technology
Reference
  • Complete genome sequence of Actinosynnema mirum type strain (101). (Stand Genomic Sci. 2009) PMID: 21304636

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.3 MB 2.0 MB 1.4 MB 528.8 KB