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Microbe : Starkeya novella

Microbe Description

NBRC No. 14993
Scientific name Starkeya novella
Synonymous name Thiobacillus novellus
History IFO 14993 <- ATCC 8093 <- R.L. Starkey
Other culture collection No. ATCC 8093=CCM 1077=CIP 104402=DSM 506=IAM 12100=NBRC 12443=NCIMB 10456=NCIMB 9113
Other No.
Reference
16559754
Cultivation of Organisms Concerned in the Oxidation of Thiosulfate. (J Bacteriol. 1934)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseSnov_1077
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseSnov_2282 Snov_1815
TRPE
(NRULE_0143)
Anthranilate synthase component ISnov_1814
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseSnov_1127
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSnov_2532
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSnov_1282 Snov_1588
ARSC1
(NRULE_0017)
Arsenate reductaseSnov_1589
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSnov_1282 Snov_1588
ARSC2
(NRULE_0018)
Arsenate reductaseSnov_1280 Snov_1590
Participant 
ARSH
(NRULE_0021)
ArsH proteinSnov_1286 Snov_1587
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSnov_0310
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CSnov_4480
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseSnov_3029
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSnov_3873 Snov_4048
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSnov_1362
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSnov_2736
 
PHAP1
(NRULE_0374)
PhasinSnov_0612
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CSnov_4480
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSnov_0837 Snov_0506 Snov_2551 Snov_1912
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSnov_0518 Snov_4303 Snov_3606 Snov_2553
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSnov_0518 Snov_2553 Snov_3606 Snov_4303
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSnov_2552
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSnov_2551 Snov_1025
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSnov_2630
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseSnov_0477
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSnov_3017
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSnov_3016 Snov_2479 Snov_1289
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSnov_2052 Snov_1408 Snov_0195 Snov_4174 Snov_4173 Snov_3377 Snov_2128
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseSnov_1055
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BSnov_1054
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ESnov_1057
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseSnov_4182
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseSnov_4183
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeSnov_4184 Snov_2556

Genomic Overview

BioProject IDPRJNA37659
Locus_tagSNOV
INSDC entriesCP002026
Sequence statusComplete
Current status
Contig number1
Size(bp) 4,765,023
Gene 4,431
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)). (Stand Genomic Sci. 2012) PMID: 23450099

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.4 MB 1.2 MB 897.1 KB 354.9 KB