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微生物 : Starkeya novella

微生物株情報

NBRC番号 14993
学名 Starkeya novella
別名(シノニム) Thiobacillus novellus
由来 IFO 14993 <- ATCC 8093 <- R.L. Starkey
他保存機関番号 ATCC 8093=CCM 1077=CIP 104402=DSM 506=IAM 12100=NBRC 12443=NCIMB 10456=NCIMB 9113
他株番号
参考文献
16559754
Cultivation of Organisms Concerned in the Oxidation of Thiosulfate. (J Bacteriol. 1934)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSnov_1077
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSnov_2282 Snov_1815
TRPE
(NRULE_0143)
Anthranilate synthase component ISnov_1814
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseSnov_1127
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSnov_2532
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSnov_1282 Snov_1588
ARSC1
(NRULE_0017)
Arsenate reductaseSnov_1589
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSnov_1282 Snov_1588
ARSC2
(NRULE_0018)
Arsenate reductaseSnov_1280 Snov_1590
任意 
ARSH
(NRULE_0021)
ArsH proteinSnov_1286 Snov_1587
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSnov_0310
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CSnov_4480
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseSnov_3029
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSnov_3873 Snov_4048
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSnov_1362
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSnov_2736
 
PHAP1
(NRULE_0374)
PhasinSnov_0612
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CSnov_4480
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSnov_0837 Snov_0506 Snov_2551 Snov_1912
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSnov_0518 Snov_4303 Snov_3606 Snov_2553
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSnov_0518 Snov_2553 Snov_3606 Snov_4303
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSnov_2552
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSnov_2551 Snov_1025
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSnov_2630
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseSnov_0477
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSnov_3017
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSnov_3016 Snov_2479 Snov_1289
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSnov_2052 Snov_1408 Snov_0195 Snov_4174 Snov_4173 Snov_3377 Snov_2128
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseSnov_1055
任意 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BSnov_1054
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ESnov_1057
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseSnov_4182
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseSnov_4183
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeSnov_4184 Snov_2556

ゲノム配列情報

BioProject IDPRJNA37659
ローカスタグSNOV
INSDC entriesCP002026
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 4,765,023
遺伝子数 4,431
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)). (Stand Genomic Sci. 2012) PMID: 23450099

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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