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Microbe : Halomonas elongata

Microbe Description

NBRC No. 15536
Scientific name Halomonas elongata
Synonymous name Hyphomicrobium neptunium
History IFO 15536 <- ATCC 33173 <- R. Vreeland
Other culture collection No. ATCC 33173=CIP 104264=DSM 2581=LMG 9076=NCIMB 2198
Other No.
Reference
20849449
A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T. (Environ Microbiol. 2011)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHELO_3609
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AHELO_1444
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHELO_3374
TRPE
(NRULE_0143)
Anthranilate synthase component IHELO_3375
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHELO_3883 HELO_1607
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHELO_4438
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AHELO_1444
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseHELO_1859
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseHELO_3394
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseHELO_3876
 
PHAP1
(NRULE_0374)
PhasinHELO_3395
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseHELO_2169
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseHELO_2155
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDHELO_2166
BIOB
(NRULE_0185)
Biotin synthaseHELO_2170
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseHELO_2589
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseHELO_2588
ECTC
(NRULE_0188)
L-ectoine synthaseHELO_2590
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseHELO_3374
DHPS
(NRULE_0144)
Dihydropteroate synthaseHELO_4143
FOLA
(NRULE_0147)
Dihydrofolate reductaseHELO_1702
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHELO_3476 HELO_2174
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHELO_3477 HELO_4127
FOLC
(NRULE_0160)
Bifunctional protein FolCHELO_2241
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHELO_1738
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHELO_2001
Histamine biosynthesis(NFUNC_0078)
RequireB
HDC
(NRULE_0245)
Histidine decarboxylaseHELO_2826
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylaseHELO_4008
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseHELO_2589
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseHELO_2588
 
ECTC
(NRULE_0188)
L-ectoine synthaseHELO_2590
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseHELO_1632
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHELO_2063 HELO_1162 HELO_1847 HELO_2486 HELO_2791 HELO_2989 HELO_3091
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHELO_2061 HELO_3382
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRHELO_1767
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHELO_2061 HELO_3382
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinHELO_2062
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinHELO_2063
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseHELO_4130
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseHELO_4128
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseHELO_2300
PANC
(NRULE_0118)
Pantothenate synthetaseHELO_4129
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AHELO_1444
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseHELO_3590
RIBA
(NRULE_0201)
GTP cyclohydrolase-2HELO_1088 HELO_3590
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDHELO_3591
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseHELO_3589 HELO_1195
RIBE
(NRULE_0204)
Riboflavin synthaseHELO_2996
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFHELO_1316
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterHELO_3694 HELO_1580 HELO_2750 HELO_3358 HELO_4292
E
OPUE
(NRULE_0222)
Sodium/proline symporterHELO_1801
F
TEAA
(NRULE_0223)
TRAP transporter substrate-binding protein TeaAHELO_4274
TEAB
(NRULE_0224)
TRAP transporter small transmembrane protein TeaBHELO_4275
TEAC
(NRULE_0225)
TRAP transporter large transmembrane protein TeaCHELO_4276

Genomic Overview

BioProject IDPRJEA49333
Locus_tagHELO
INSDC entriesFN869568
Sequence statusComplete
Current status
Contig number1
Size(bp) 4,061,296
Gene 3,472
Finishing goal
Assembly method
Coverage
Technology
Reference
  • A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T. (Environ Microbiol. 2011) PMID: 20849449

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.2 MB 1.0 MB 750.1 KB 285.9 KB