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微生物 : Vibrio orientalis

微生物株情報

NBRC番号 15638
学名 Vibrio orientalis
別名（シノニム） 該当データなし
由来 IFO 15638 <- Hiroshima Univ. (K. Muroga, HUFP 9205) <- ATCC 33934 <- P. Baumann <- Y. Yang
他保存機関番号 ATCC 33934=CAIM 332=CCUG 16389=CIP 102891=LMG 7897
他株番号
参考文献
21930677
Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea. (Int J Syst Evol Microbiol. 2012)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseVIOR3934_12832
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseVIOR3934_04744 VIOR3934_11582
TRPE
(NRULE_0143)
Anthranilate synthase component IVIOR3934_04749
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBVIOR3934_14537
ARSC1
(NRULE_0017)
Arsenate reductaseVIOR3934_07818
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseVIOR3934_09860
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseVIOR3934_13542
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseVIOR3934_13842
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseVIOR3934_13857
 
PHAP1
(NRULE_0374)
PhasinVIOR3934_13847
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseVIOR3934_03217
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseVIOR3934_03227
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDVIOR3934_03207
BIOB
(NRULE_0185)
Biotin synthaseVIOR3934_03222
Chloramphenicol resistance(NFUNC_0025)
必須B
CAT4
(NRULE_0108)
Chloramphenicol acetyltransferaseVIOR3934_05254
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseVIOR3934_21261
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseVIOR3934_21266
ECTC
(NRULE_0188)
L-ectoine synthaseVIOR3934_21256
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferaseVIOR3934_04744 VIOR3934_11582
DHPS
(NRULE_0144)
Dihydropteroate synthaseVIOR3934_00975
FOLA
(NRULE_0147)
Dihydrofolate reductaseVIOR3934_09775
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseVIOR3934_09850
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseVIOR3934_09855 VIOR3934_01065
FOLC
(NRULE_0160)
Bifunctional protein FolCVIOR3934_06279
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IVIOR3934_04944
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseVIOR3934_16266
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseVIOR3934_11212
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinVIOR3934_08291 VIOR3934_00755
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVIOR3934_12680 VIOR3934_08281 VIOR3934_00815
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRVIOR3934_14707
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRVIOR3934_20280
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRVIOR3934_12762
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRVIOR3934_18298
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVIOR3934_12680 VIOR3934_08281 VIOR3934_00815
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinVIOR3934_08286
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinVIOR3934_08291
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseVIOR3934_19130 VIOR3934_15526 VIOR3934_14122
RIBA
(NRULE_0201)
GTP cyclohydrolase-2VIOR3934_19055 VIOR3934_05004 VIOR3934_14122
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDVIOR3934_14132
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseVIOR3934_14117
RIBE
(NRULE_0204)
Riboflavin synthaseVIOR3934_21551 VIOR3934_14127
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFVIOR3934_12555
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterVIOR3934_20365 VIOR3934_13067 VIOR3934_11197 VIOR3934_21091
E
OPUE
(NRULE_0222)
Sodium/proline symporterVIOR3934_19495
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseVIOR3934_09645
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseVIOR3934_10145
SERC
(NRULE_0210)
Phosphoserine aminotransferaseVIOR3934_04539
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseVIOR3934_09795
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseVIOR3934_16761

ゲノム配列情報

BioProject IDPRJNA68623
ローカスタグVIOR3934
INSDC entriesAFWH01000000
ステータスWGS
解析状況
コンティグ数105
サイズ(bp) 4,653,015
遺伝子数 4,280
フィニッシングゴール
アセンブル方法Newbler v. 2.5
冗長度20x
シーケンス方法
  • 454 FLX Titanium
参考文献
  • Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea. (Int J Syst Evol Microbiol. 2012) PMID: 21930677

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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