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微生物 : Ochrobactrum intermedium

微生物株情報

NBRC番号 15820
学名 Ochrobactrum intermedium
別名(シノニム) 該当データなし
由来 IFO 15820 <- LMG 3301 <- M. Popoff
他保存機関番号 CCUG 24694=CIP 105838=DSM 17986=KCTC 22835=LMG 3301=NCTC 12171
他株番号 cns 2-75
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseOINT_1001835
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseOINT_2000663
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須D
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferaseOINT_1000421
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseOINT_1000828
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseOINT_1001710
TRPE
(NRULE_0143)
Anthranilate synthase component IOINT_1001710
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseOINT_1001807
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBOINT_1001096
ARSC1
(NRULE_0017)
Arsenate reductaseOINT_1001095
任意 
ARSH
(NRULE_0021)
ArsH proteinOINT_1001094
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseOINT_1001936
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseOINT_1000607
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinOINT_2001330 OINT_2000946 OINT_2000840 OINT_2000541 OINT_2000230 OINT_1001631 OINT_1000848 OINT_1000300 OINT_2000993
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinOINT_2001509 OINT_1000121 OINT_1000844 OINT_1001465 OINT_2000100 OINT_2001332 OINT_4000022
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueROINT_1000240
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxROINT_2000242
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinOINT_2001509 OINT_4000022 OINT_2000100 OINT_1001465 OINT_2001332 OINT_1000844 OINT_1000121
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinOINT_2001331
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinOINT_2001330
Streptomycin resistance(NFUNC_0054)
必須B
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferaseOINT_1000421
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseOINT_1000828
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseOINT_1000603
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseOINT_1000602
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinOINT_2000549
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinOINT_2000548
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinOINT_2000547
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinOINT_2000546
D
PROP
(NRULE_0221)
Osmoprotectant transporterOINT_2001914

ゲノム配列情報

BioProject IDPRJNA37725
ローカスタグOINT
INSDC entriesACQA00000000
ステータスWGS
解析状況
コンティグ数4
サイズ(bp) 4,725,392
遺伝子数 4,363
フィニッシングゴール
アセンブル方法
冗長度5x Sanger; 25x 454
シーケンス方法
  • ABI
  • 454.
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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