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微生物 : Tsukamurella paurometabola

微生物株情報

NBRC番号 16120
学名 Tsukamurella paurometabola
別名(シノニム) Corynebacterium paurometabolum
Rhodococcus aurantiacus
Tsukamurella paurometabolum (sic)
由来 IFO 16120 <- ATCC 8368 <- E.A. Steinhaus
他保存機関番号 ATCC 8368=CCUG 35730=CIP 100753=DSM 20162=JCM 10117=NBRC 12160=NBRC 16083=NCTC 13040
他株番号
参考文献
21886861
Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). (Stand Genomic Sci. 2011)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseTpau_0878
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseTpau_2750
任意 
RUBA
(NRULE_0039)
RubredoxinTpau_2748 Tpau_2749
 
RUBB
(NRULE_0040)
Rubredoxin reductaseTpau_2747
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinTpau_3849 Tpau_0156 Tpau_2207 Tpau_2694
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseTpau_2457
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBTpau_2233
ARSC1
(NRULE_0017)
Arsenate reductaseTpau_3196
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseTpau_2133
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CTpau_0388
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseTpau_2794
Bioplastic degradation(NFUNC_0015)
必須C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymeraseTpau_3966
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CTpau_0388
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseTpau_1556
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseTpau_1557
ECTC
(NRULE_0188)
L-ectoine synthaseTpau_1555
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseTpau_1616
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseTpau_3672
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseTpau_1556
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseTpau_1557
 
ECTC
(NRULE_0188)
L-ectoine synthaseTpau_1555
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseTpau_1173
D
ERE
(NRULE_0168)
Erythromycin esteraseTpau_1168
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinTpau_3526 Tpau_2777
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinTpau_2780 Tpau_2302
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRTpau_1099
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinTpau_2302 Tpau_2780
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinTpau_2303
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseTpau_2457
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseTpau_3642
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseTpau_3643
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterTpau_4142 Tpau_2792
E
OPUE
(NRULE_0222)
Sodium/proline symporterTpau_1334
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
必須A
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseTpau_0523
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseTpau_0524
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseTpau_0522
任意 
VANR
(NRULE_0284)
Two-component system response regulator VanRTpau_0520
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSTpau_0521
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSTpau_1926
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTTpau_1930

ゲノム配列情報

BioProject IDPRJNA29399
ローカスタグTPAU
INSDC entriesCP001966
ステータスComplete
解析状況
コンティグ数2
サイズ(bp) 4,479,724
遺伝子数 4,242
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). (Stand Genomic Sci. 2011) PMID: 21886861

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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