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微生物 : Fischerella sp.

微生物株情報

NBRC番号 該当データなし
学名 Fischerella sp.
別名（シノニム） 該当データなし
由来
他保存機関番号 PCC 9339
他株番号
参考文献
23277585
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. (Proc Natl Acad Sci U S A. 2013)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemasePCC9339_RS0124790 PCC9339_RS0120620
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須B
AAC6
(NRULE_0150)
Aminoglycoside N(6')-acetyltransferasePCC9339_RS0133135
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APCC9339_RS0111695
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferasePCC9339_RS0120655 PCC9339_RS0102545 PCC9339_RS0104905 PCC9339_RS0107140
TRPE
(NRULE_0143)
Anthranilate synthase component IPCC9339_RS0104905 PCC9339_RS0112555 PCC9339_RS0102545 PCC9339_RS0107140
Arsenical resistance(NFUNC_0004)
必須F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBPCC9339_RS0134150
ARSC3
(NRULE_0019)
Arsenate reductasePCC9339_RS0134160
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPasePCC9339_RS0108750
 
ARSH
(NRULE_0021)
ArsH proteinPCC9339_RS0134155
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePCC9339_RS0112200
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APCC9339_RS0111695
Cyclodextrin biosynthesis(NFUNC_0076)
必須A
CGT
(NRULE_0243)
Cyclomaltodextrin glucanotransferasePCC9339_RS0128300
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPCC9339_RS0110925 PCC9339_RS0104330 PCC9339_RS0133180 PCC9339_RS0128215 PCC9339_RS0111325 PCC9339_RS0104370
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPCC9339_RS0117865 PCC9339_RS0108875 PCC9339_RS0107320
J
SMTA
(NRULE_0009)
MetallothioneinPCC9339_RS0125145
Metallothionein(NFUNC_0006)
必須A
SMTA
(NRULE_0009)
MetallothioneinPCC9339_RS0125145
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPCC9339_RS0107320 PCC9339_RS0117865 PCC9339_RS0108875
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPCC9339_RS0117870
Nitrogenase(NFUNC_0094)
必須C
VNFD
(NRULE_0349)
Nitrogenase vanadium-iron protein alpha chainPCC9339_RS0104300
VNFK
(NRULE_0351)
Nitrogenase vanadium-iron protein beta chainPCC9339_RS0104295
VNFG
(NRULE_0352)
Nitrogenase vanadium-iron protein delta chainPCC9339_RS0104300
VNFH
(NRULE_0353)
Nitrogenase reductasePCC9339_RS0104340 PCC9339_RS0128055
D
VNFK
(NRULE_0350)
Nitrogenase vanadium-iron protein alpha/delta chain PCC9339_RS0104300
VNFK
(NRULE_0351)
Nitrogenase vanadium-iron protein beta chainPCC9339_RS0104295
VNFH
(NRULE_0353)
Nitrogenase reductasePCC9339_RS0104340 PCC9339_RS0128055
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APCC9339_RS0111695
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePCC9339_RS0114750
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PCC9339_RS0114750 PCC9339_RS0133910
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPCC9339_RS0127150
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePCC9339_RS0120725
RIBE
(NRULE_0204)
Riboflavin synthasePCC9339_RS0119755
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPCC9339_RS0104885 PCC9339_RS0111505
Streptogramin resistance(NFUNC_0027)
必須A
VAT
(NRULE_0113)
Streptogramin A acetyltransferasePCC9339_RS0123235
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthasePCC9339_RS0133195
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolasePCC9339_RS0133200
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymePCC9339_RS0107460 PCC9339_RS0119465 PCC9339_RS0133210
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthasePCC9339_RS0133795

ゲノム配列情報

BioProject IDPRJNA159505
ローカスタグPCC9339
INSDC entriesNZ_JH992898
ステータスScaffold
解析状況
コンティグ数13
サイズ(bp) 8,000,057
遺伝子数 6,365
フィニッシングゴールImproved High-Quality Draft
アセンブル方法Newbler v. 2.3
冗長度30x
シーケンス方法
  • 454-GS-FLX-Titanium
  • Illumina HiSeq
参考文献
  • Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. (Proc Natl Acad Sci U S A. 2013) PMID: 23277585

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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