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Microbe : Ktedonobacter racemifer

Microbe Description

NBRC No. Not assigned
Scientific name Ktedonobacter racemifer
Synonymous name Not assigned
History
Other culture collection No. SOSP1-21=DSM 44963
Other No.
Reference
22180814
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). (Stand Genomic Sci. 2011)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseKrac_8380
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseKrac_4278
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseKrac_8168
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireC
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseKrac_9633 Krac_0902 Krac_3174
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseKrac_2261 Krac_5153 Krac_7174
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseKrac_3354
D
HPH
(NRULE_0174)
Hygromycin-B 4-O-kinaseKrac_0432
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseKrac_10779
TRPE
(NRULE_0143)
Anthranilate synthase component IKrac_10778
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseKrac_12492
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseKrac_7909
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKrac_4931 Krac_12274
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CKrac_1224
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseKrac_3215 Krac_3214
Bleomycin resistance(NFUNC_0021)
RequireA
BLE
(NRULE_0096)
Bleomycin resistance proteinKrac_1063
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CKrac_1224
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseKrac_0319 Krac_5846 Krac_2014
Gentamicin resistance(NFUNC_0053)
RequireA
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseKrac_3174 Krac_9633 Krac_0902
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseKrac_8168
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
RequireA
DHAA
(NRULE_0050)
Haloalkane dehalogenaseKrac_6512 Krac_7198
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseKrac_4618
Hygromycin resistance(NFUNC_0055)
RequireA
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseKrac_3354
B
HPH
(NRULE_0174)
Hygromycin-B 4-O-kinaseKrac_0432
Kanamycin resistance(NFUNC_0052)
RequireB
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseKrac_3174 Krac_9633 Krac_0902
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseKrac_8168
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseKrac_8787
D
ERE
(NRULE_0168)
Erythromycin esteraseKrac_5187 Krac_4486
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKrac_8870 Krac_2652 Krac_4682 Krac_12194
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKrac_12330 Krac_8923 Krac_7963
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKrac_12330 Krac_8923 Krac_7963
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinKrac_8924
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinKrac_8870
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseKrac_2154
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Krac_2154 Krac_1701 Krac_1421
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDKrac_1420 Krac_2906 Krac_1702
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseKrac_2155
RIBE
(NRULE_0204)
Riboflavin synthaseKrac_2156
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFKrac_11251
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseKrac_2261 Krac_5153 Krac_7174
Thiocyanate hydrolase(NFUNC_0003)
RequireA
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaKrac_10845 Krac_10842 Krac_10844
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaKrac_10842 Krac_10844 Krac_10845
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaKrac_10843
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaKrac_10844 Krac_10845 Krac_10842
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaKrac_10843
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaKrac_10842 Krac_10845 Krac_10844
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaKrac_10843
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSKrac_9163
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTKrac_9162

Genomic Overview

BioProject IDPRJNA27943
Locus_tagKRAC
INSDC entriesADVG01000000
Sequence statusContig
Current status
Contig number10
Size(bp) 13,661,586
Gene 11,453
Finishing goal
Assembly method
Coverage
Technology
  • 454
  • Sanger
Reference
  • Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). (Stand Genomic Sci. 2011) PMID: 22180814

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
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FASTA
gz
TSV
uncompressed
4.1 MB 3.3 MB 2.1 MB 907.9 KB