| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000000411
|
|---|---|
| データタイトル |
ゲノム（Marivirga tractuosa DSM 4126 chromosome, complete genome）
|
| 生物種名 |
Marivirga tractuosa DSM 4126
|
| アクセッション番号またはID |
CP002349
|
| コメント |
Marivirga tractuosa DSM 4126 chromosome, complete genome.
|
| ゲノム配列のバージョン |
CP002349.1
|
| 登録日または更新日 |
2010-11-30
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| CDSファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
4511574
|
| 形態 |
circular
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
DSM 4126
|
| 分離源 |
beach sand
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
URL -- http://www.jgi.doe.gov~JGI Project ID: 4085041~Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)~Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)~ David Bruce (microbe@cuba.jgi-psf.org)~Whole genome sequencing and draft assembly at JGI-PGF~Finishing done by JGI-LANL~Annotation by JGI-ORNL and JGI-PGF~The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.~(http://www.genome.gov/page.cfm?pageID=10506376).; ; ##MIGS-Data-START## ; investigation_type :: bacteria_archaea ; project_name :: Marivirga tractuosa Lewin H43, DSM 4126 ; collection_date :: Missing ; lat_lon :: 12.250 109.199 ; depth :: Missing ; alt_elev :: Missing ; country :: Vietnam ; environment :: Missing ; num_replicons :: 2 ; ref_biomaterial :: DSM 4126, ATCC 23168, IFO 15989, NBRC 15989, NCMB 1408 ; biotic_relationship :: Free living ; trophic_level :: Missing ; rel_to_oxygen :: Missing ; isol_growth_condt :: 5360476 ; sequencing_meth :: WGS ; assembly :: Newbler v. 2.3 (pre-release) ; finishing_strategy :: Finished ; GOLD Stamp ID :: Gi03940 ; Type Strain :: Yes ; Greengenes ID :: 58628 ; Funding Program :: DOE-GEBA 2007 ; Gene Calling Method :: IMG/ER 2.8 ; Isolation Site :: beach sand from Nha Trang ; Isolation Comments :: isolated by RA Lewin ; Temperature Range :: Mesophile ; Temperature Optimum :: 30C ; Gram Staining :: Gram- ; Diseases :: None ; ##MIGS-Data-END##; ; ##Genome-Assembly-Data-START## ; Finishing Goal :: Finished ; Current Finishing Status :: Finished ; Assembly Method :: Newbler v. 2.3 ; Genome Coverage :: 30x ; Sequencing Technology :: Illumina, 454 ; ##Genome-Assembly-Data-END##
|
| 参照 |
1
|
| タイトル |
Complete genome sequence of Marivirga tractuosa type strain (H-43T)
|
| 雑誌名/登録機関名 |
Stand Genomic Sci 4 (2), 154-162 (2011)
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Pagani,I. Chertkov,O. Lapidus,A. Lucas,S. Del Rio,T.G. Tice,H. Copeland,A. Cheng,J.F. Nolan,M. Saunders,E. Pitluck,S. Held,B. Goodwin,L. Liolios,K. Ovchinikova,G. Ivanova,N. Mavromatis,K. Pati,A. Chen,A. Palaniappan,K. Land,M. Hauser,L. Jeffries,C.D. Detter,J.C. Han,C. Tapia,R. Ngatchou-Djao,O.D. Rohde,M. Goker,M. Spring,S. Sikorski,J. Woyke,T. Bristow,J. Eisen,J.A. Markowitz,V. Hugenholtz,P. Klenk,H.P. Kyrpides,N.C.
|
| PubMed | |
| 参照 |
2
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Lucas,S. Copeland,A. Lapidus,A. Bruce,D. Goodwin,L. Pitluck,S. Kyrpides,N. Mavromatis,K. Pagani,I. Ivanova,N. Ovchinnikova,G. Chertkov,O. Held,B. Detter,J.C. Han,C. Tapia,R. Land,M. Hauser,L. Markowitz,V. Cheng,J.-F. Hugenholtz,P. Woyke,T. Wu,D. Spring,S. Schroeder,M. Schneider,S. Klenk,H.-P. Eisen,J.A.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
