| データタイトル | 他機関での菌株情報 | 遺伝子型 | 復元液 | データID | 菌株番号 | カタログURL | 生物種名 | 生物種名（著者名含） | 基準株 | 来歴 | 分離源 | 分類 | 培養温度 | 培養培地 | 親株（変異株の場合） | 付加情報 |
|---|
解析情報 ゲノム
| データID | ANGE0000000001589 |
|---|---|
| データタイトル | ゲノム（RefSeq:Calditerrivibrio nitroreducens DSM 19672, complete sequence） |
| 生物種名 | Calditerrivibrio nitroreducens DSM 19672 |
| アクセッション番号またはID | NC_014758 |
| コメント | Calditerrivibrio nitroreducens DSM 19672, complete sequence. |
| ゲノム配列のバージョン | NC_014758.1 |
| 登録日または更新日 | 2010-12-07 |
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| CDSファイルダウンロード | |
| 配列長（bp）または配列数（rc） | 2157835 |
| 形態 | circular |
| BioProject | |
| BioSample | |
| 配列の種類 | genomic DNA |
| strain | DSM 19672 |
| 分離源 | terrestrial hot spring |
| plasmid | |
| 備考 | |
| 菌株へのコメント | REFSEQ INFORMATION: The reference sequence is identical to CP002347.1.; URL -- http://www.jgi.doe.gov~JGI Project ID: 4087656~Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)~Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)~ David Bruce (microbe@cuba.jgi-psf.org)~Whole genome sequencing and draft assembly at JGI-PGF~Finishing done by JGI-LANL~Annotation by JGI-ORNL and JGI-PGF~The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.~(http://www.genome.gov/page.cfm?pageID=10506376).; The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ; ##MIGS-Data-START## ; investigation_type :: bacteria_archaea ; project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 ; collection_date :: Missing ; lat_lon :: 36.829513 138.217163 ; depth :: Missing ; alt_elev :: Missing ; country :: Japan ; environment :: Host ; num_replicons :: 2 ; ref_biomaterial :: DSM 19672, NBRC 101217 ; biotic_relationship :: Free living ; trophic_level :: Missing ; rel_to_oxygen :: Anaerobe ; isol_growth_condt :: 18599715 ; sequencing_meth :: WGS ; assembly :: Newbler v. 2.3 (pre-release) ; finishing_strategy :: Finished ; GOLD Stamp ID :: Gi04007 ; Type Strain :: Yes ; Funding Program :: DOE-GEBA 2009 ; Gene Calling Method :: Prodigal 1.4, GenePRIMP ; Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata ; Cell Shape :: Vibrio-shaped ; Motility :: Motile ; Sporulation :: Nonsporulating ; Temperature Range :: Thermophile ; Temperature Optimum :: 55C ; pH :: 7.0 - 7.5 ; Gram Staining :: Gram- ; Diseases :: None ; ##MIGS-Data-END##; ; ##Genome-Assembly-Data-START## ; Finishing Goal :: Finished ; Current Finishing Status :: Finished ; Assembly Method :: Newbler v. 2.3 ; Genome Coverage :: 30x ; Sequencing Technology :: Illumina, 454 ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Date :: 06/17/2021 01:13:02 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 5.2 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 2,179 ; CDSs (total) :: 2,128 ; Genes (coding) :: 2,117 ; CDSs (with protein) :: 2,117 ; Genes (RNA) :: 51 ; rRNAs :: 2, 2, 2 (5S, 16S, 23S) ; complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) ; tRNAs :: 41 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 11 ; CDSs (without protein) :: 11 ; Pseudo Genes (ambiguous residues) :: 0 of 11 ; Pseudo Genes (frameshifted) :: 6 of 11 ; Pseudo Genes (incomplete) :: 4 of 11 ; Pseudo Genes (internal stop) :: 4 of 11 ; Pseudo Genes (multiple problems) :: 3 of 11 ; CRISPR Arrays :: 4 ; ##Genome-Annotation-Data-END##; COMPLETENESS: full length. |
| 参照 | 1 |
| タイトル | Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) |
| 雑誌名/登録機関名 | Stand Genomic Sci 4 (1), 54-62 (2011) |
| 出版年月 | |
| 巻・号・ページ | |
| 著者 | Pitluck,S. Sikorski,J. Zeytun,A. Lapidus,A. Nolan,M. Lucas,S. Hammon,N. Deshpande,S. Cheng,J.F. Tapia,R. Han,C. Goodwin,L. Liolios,K. Pagani,I. Ivanova,N. Mavromatis,K. Pati,A. Chen,A. Palaniappan,K. Hauser,L. Chang,Y.J. Jeffries,C.D. Detter,J.C. Brambilla,E. Djao,O.D. Rohde,M. Spring,S. Goker,M. Woyke,T. Bristow,J. Eisen,J.A. Markowitz,V. Hugenholtz,P. Kyrpides,N.C. Klenk,H.P. Land,M. |
| PubMed | |
| 参照 | 2 |
| タイトル | The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 |
| 雑誌名/登録機関名 | Unpublished |
| 出版年月 | |
| 巻・号・ページ | |
| 著者 | Lucas,S. Copeland,A. Lapidus,A. Bruce,D. Goodwin,L. Pitluck,S. Kyrpides,N. Mavromatis,K. Ivanova,N. Mikhailova,N. Zeytun,A. Brettin,T. Detter,J.C. Tapia,R. Han,C. Land,M. Hauser,L. Markowitz,V. Cheng,J.-F. Hugenholtz,P. Woyke,T. Wu,D. Spring,S. Schroeder,M. Brambilla,E. Klenk,H.-P. Eisen,J.A. |
| PubMed | |
| 参照 | 3 |
| タイトル | Direct Submission |
| 雑誌名/登録機関名 | Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
| 出版年月 | |
| 巻・号・ページ | |
| 著者 | Lucas,S. Copeland,A. Lapidus,A. Bruce,D. Goodwin,L. Pitluck,S. Kyrpides,N. Mavromatis,K. Ivanova,N. Mikhailova,N. Zeytun,A. Brettin,T. Detter,J.C. Tapia,R. Han,C. Land,M. Hauser,L. Markowitz,V. Cheng,J.-F. Hugenholtz,P. Woyke,T. Wu,D. Spring,S. Schroeder,M. Brambilla,E. Klenk,H.-P. Eisen,J.A. |
| PubMed | |
| 関連情報 |
このデータにリンクしている情報 |
1.微生物株情報
2.微生物種情報
5.文献情報
Not found
7.コレクション情報
8.提供機関情報
9.実験情報
Not found
10.プロジェクト情報
Not found
