| データタイトル | 他機関での菌株情報 | 遺伝子型 | 復元液 | データID | 菌株番号 | カタログURL | 生物種名 | 生物種名（著者名含） | 基準株 | 来歴 | 分離源 | 分類 | 培養温度 | 培養培地 | 親株（変異株の場合） | 付加情報 |
|---|
解析情報 ゲノム
| データID | ANGE0000000001815 |
|---|---|
| データタイトル | ゲノム（RefSeq:Mycoplasma hyorhinis ATCC 17981 strain BTS7, whole genome shotgun sequencing project） |
| 生物種名 | Mycoplasma hyorhinis ATCC 17981 |
| アクセッション番号またはID | NZ_ARTL00000000 |
| コメント | Mycoplasma hyorhinis ATCC 17981 strain BTS7, whole genome shotgun sequencing project. |
| ゲノム配列のバージョン | NZ_ARTL00000000.1 |
| 登録日または更新日 | 2013-05-03 |
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| CDSファイルダウンロード | |
| 配列長（bp）または配列数（rc） | 804242 |
| 形態 | linear |
| BioProject | |
| BioSample | |
| 配列の種類 | genomic DNA |
| strain | BTS7 |
| 分離源 | |
| plasmid | |
| 備考 | |
| 菌株へのコメント | REFSEQ INFORMATION: The reference sequence is identical to ARTL00000000.1.; The Mycoplasma hyorhinis ATCC 17981 whole genome shotgun (WGS) project has the project accession NZ_ARTL00000000. This version of the project (01) has the accession number NZ_ARTL01000000, and consists of sequences ARTL01000001-ARTL01000026.; URL -- http://www.jgi.doe.gov~JGI Project ID: 1008123~Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)~Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)~ Tanja Woyke (microbe@cuba.jgi-psf.org)~Whole genome sequencing and draft assembly at JGI-PGF~Annotation by JGI-PGF and JGI-ORNL~The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.~(http://www.genome.gov/page.cfm?pageID=10506376)~Full annotations are available from IMG.; ; ##MIGS-Data-START## ; investigation_type :: bacteria_archaea ; project_name :: Mycoplasma hyorhinis ATCC 17981 ; collection_date :: Missing ; lat_lon :: Missing ; depth :: Missing ; alt_elev :: Missing ; country :: Missing ; num_replicons :: Missing ; ref_biomaterial :: ATCC 17981, ATCC 23234, CCUG 34322, CIP 104968, IFO 14858, NBRC 14858, NCTC 10130 ; biotic_relationship :: Missing ; rel_to_oxygen :: Missing ; isol_growth_condt :: Missing ; assembly :: Velvet v. 1.1.04; ALLPATHS v. r42328 ; finishing_strategy :: Missing ; environment :: Host ; trophic_level :: Missing ; sequencing_meth :: WGS ; GOLD Stamp ID :: Gi21326 ; Type Strain :: Yes ; Isolation Site :: Nasal cavity of pig ; Gram Staining :: Gram- ; ##MIGS-Data-END##; ; ##Genome-Assembly-Data-START## ; Finishing Goal :: Improved High-Quality Draft ; Current Finishing Status :: Improved High-Quality Draft ; Assembly Method :: Velvet v. 1.1.04; ALLPATHS v. r42328 ; Genome Coverage :: Unknown ; Sequencing Technology :: Illumina HiSeq 2000 ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Date :: 11/29/2020 01:04:07 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 4.13 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 743 ; CDSs (total) :: 707 ; Genes (coding) :: 668 ; CDSs (with protein) :: 668 ; Genes (RNA) :: 36 ; rRNAs :: 1, 1, 1 (5S, 16S, 23S) ; complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) ; tRNAs :: 30 ; ncRNAs :: 3 ; Pseudo Genes (total) :: 39 ; CDSs (without protein) :: 39 ; Pseudo Genes (ambiguous residues) :: 0 of 39 ; Pseudo Genes (frameshifted) :: 26 of 39 ; Pseudo Genes (incomplete) :: 12 of 39 ; Pseudo Genes (internal stop) :: 4 of 39 ; Pseudo Genes (multiple problems) :: 3 of 39 ; ##Genome-Annotation-Data-END## |
| 参照 | 1 |
| タイトル | Direct Submission |
| 雑誌名/登録機関名 | Submitted (22-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
| 出版年月 | |
| 巻・号・ページ | |
| 著者 | Kyrpides,N. Huntemann,M. Han,J. Chen,A. Mavromatis,K. Markowitz,V. Palaniappan,K. Ivanova,N. Schaumberg,A. Pati,A. Liolios,K. Nordberg,H.P. Cantor,M.N. Hua,S.X. Woyke,T. |
| PubMed | |
| 関連情報 |
このデータにリンクしている情報 |
1.微生物株情報
2.微生物種情報
5.文献情報
Not found
7.コレクション情報
8.提供機関情報
9.実験情報
Not found
10.プロジェクト情報
Not found
