| データID |
ANGE0000000003037
|
| データタイトル |
ゲノム（Escherichia coli strain NBRC 3301 plasmid putative_pEcol1, complete sequence）
|
| 生物種名 |
Escherichia coli
|
| アクセッション番号またはID |
CP048440
|
| コメント |
Escherichia coli strain NBRC 3301 plasmid putative_pEcol1, complete sequence.
|
| ゲノム配列のバージョン |
CP048440.1
|
| 登録日または更新日 |
2020-02-13
|
| 配列取得用URL |
|
|
|
|
|
| 配列ファイルダウンロード |
|
| CDSファイルダウンロード |
|
| 配列長（bp）または配列数（rc） |
98786
|
| 形態 |
circular
|
| BioProject |
|
| BioSample |
|
| 配列の種類 |
genomic DNA
|
| strain |
NBRC 3301
|
| 分離源 |
human feces
|
| plasmid |
putative_pEcol1
|
| 備考 |
|
| 菌株へのコメント |
Bacteria and source DNA available from Japan Collection of Microorganisms (JCM).; The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ; ##Genome-Assembly-Data-START## ; Assembly Method :: Flye v. 2.5; Unicylcer v. 0.4.7 ; Genome Coverage :: 45x (ONT) + 100x (Illumnina) ; Sequencing Technology :: Illumina MiSeq (V2 chemistry, 2x251 bp reads); Oxford Nanopore MiniION (R9.4.1 flow cell) ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI ; Annotation Date :: 02/06/2020 10:48:18 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 4.11 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 4,609 ; CDSs (total) :: 4,486 ; Genes (coding) :: 4,357 ; CDSs (with protein) :: 4,357 ; Genes (RNA) :: 123 ; rRNAs :: 8, 7, 7 (5S, 16S, 23S) ; complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) ; tRNAs :: 86 ; ncRNAs :: 15 ; Pseudo Genes (total) :: 129 ; CDSs (without protein) :: 129 ; Pseudo Genes (ambiguous residues) :: 0 of 129 ; Pseudo Genes (frameshifted) :: 46 of 129 ; Pseudo Genes (incomplete) :: 70 of 129 ; Pseudo Genes (internal stop) :: 33 of 129 ; Pseudo Genes (multiple problems) :: 17 of 129 ; CRISPR Arrays :: 2 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
Complete genome sequence of Escherichia coli strain NBRC 3301
|
| 雑誌名/登録機関名 |
Unpublished
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Tourlousse,D.M. Sakamoto,M. Miura,T. Narita,K. Ohashi,A. Uchino,Y. Yamazoe,A. Kameyama,K. Terauchi,J. Ohkuma,M. Kawasaki,H. Sekiguchi,Y.
|
| PubMed |
|
| 参照 |
2
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (03-FEB-2020) Biomedical Research Institute, Advanced Biomeasurements Research Group, National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute, AIST Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Tourlousse,D.M. Sakamoto,M. Miura,T. Narita,K. Ohashi,A. Uchino,Y. Yamazoe,A. Kameyama,K. Terauchi,J. Ohkuma,M. Kawasaki,H. Sekiguchi,Y.
|
| PubMed |
|
