データID |
ANGE0000000003359
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データタイトル |
ゲノム(Bifidobacterium longum subsp. longum strain NBRC 114494 chromosome, complete genome)
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生物種名 |
Bifidobacterium longum subsp. longum
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アクセッション番号またはID |
CP084020
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コメント |
Bifidobacterium longum subsp. longum strain NBRC 114494 chromosome, complete genome.
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ゲノム配列のバージョン |
CP084020.1
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登録日または更新日 |
2021-10-07
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配列取得用URL |
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配列ファイルダウンロード |
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配列長(bp)または配列数(rc) |
2526616
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形態 |
circular
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BioProject |
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BioSample |
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配列の種類 |
genomic DNA
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strain |
NBRC 114494
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分離源 |
human feces
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plasmid |
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備考 |
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菌株へのコメント |
Bacteria and source DNA available from NBRC 114494.; The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ; ##Genome-Assembly-Data-START## ; Assembly Method :: Flye v. 2.8.3; Unicycler v. 0.4.7 ; Assembly Name :: Blong_114494 ; Genome Representation :: Full ; Expected Final Version :: Yes ; Genome Coverage :: 509.0x ; Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI ; Annotation Date :: 09/23/2021 10:37:50 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 5.3 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 2,207 ; CDSs (total) :: 2,134 ; Genes (coding) :: 2,084 ; CDSs (with protein) :: 2,084 ; Genes (RNA) :: 73 ; rRNAs :: 4, 4, 4 (5S, 16S, 23S) ; complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) ; tRNAs :: 58 ; ncRNAs :: 3 ; Pseudo Genes (total) :: 50 ; CDSs (without protein) :: 50 ; Pseudo Genes (ambiguous residues) :: 0 of 50 ; Pseudo Genes (frameshifted) :: 16 of 50 ; Pseudo Genes (incomplete) :: 38 of 50 ; Pseudo Genes (internal stop) :: 4 of 50 ; Pseudo Genes (multiple problems) :: 7 of 50 ; CRISPR Arrays :: 1 ; ##Genome-Annotation-Data-END##
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参照 |
1
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タイトル |
Characterization and demonstration of mock communities as control reagents for accurate human microbiome community measurements
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雑誌名/登録機関名 |
Unpublished
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出版年月 |
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巻・号・ページ |
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著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
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PubMed |
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参照 |
2
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タイトル |
Direct Submission
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雑誌名/登録機関名 |
Submitted (21-SEP-2021) Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute, AIST Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
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出版年月 |
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巻・号・ページ |
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著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
PubMed |
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