データID |
ANGE0000000003366
|
データタイトル |
ゲノム(Flavonifractor plautii strain NBRC 113805 chromosome, complete genome)
|
生物種名 |
Flavonifractor plautii
|
アクセッション番号またはID |
CP084007
|
コメント |
Flavonifractor plautii strain NBRC 113805 chromosome, complete genome.
|
ゲノム配列のバージョン |
CP084007.1
|
登録日または更新日 |
2021-09-30
|
配列取得用URL |
|
|
|
配列ファイルダウンロード |
|
CDSファイルダウンロード |
|
配列長(bp)または配列数(rc) |
4277038
|
形態 |
circular
|
BioProject |
|
BioSample |
|
配列の種類 |
genomic DNA
|
strain |
NBRC 113805
|
分離源 |
human feces
|
plasmid |
|
備考 |
|
菌株へのコメント |
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ; ##Genome-Assembly-Data-START## ; Assembly Method :: Flye v. 2.8.3; Racon v. 1.4.20; Pilon v. 1.23 ; Assembly Name :: Fpla_113805 ; Genome Representation :: Full ; Expected Final Version :: Yes ; Genome Coverage :: 389.0x ; Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI ; Annotation Date :: 09/23/2021 10:58:23 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 5.3 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 4,228 ; CDSs (total) :: 4,155 ; Genes (coding) :: 4,061 ; CDSs (with protein) :: 4,061 ; Genes (RNA) :: 73 ; rRNAs :: 3, 3, 3 (5S, 16S, 23S) ; complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) ; tRNAs :: 60 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 94 ; CDSs (without protein) :: 94 ; Pseudo Genes (ambiguous residues) :: 0 of 94 ; Pseudo Genes (frameshifted) :: 28 of 94 ; Pseudo Genes (incomplete) :: 71 of 94 ; Pseudo Genes (internal stop) :: 14 of 94 ; Pseudo Genes (multiple problems) :: 16 of 94 ; CRISPR Arrays :: 1 ; ##Genome-Annotation-Data-END##
|
参照 |
1
|
タイトル |
Characterization and demonstration of mock communities as control reagents for accurate human microbiome community measurements
|
雑誌名/登録機関名 |
Unpublished
|
出版年月 |
|
巻・号・ページ |
|
著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
PubMed |
|
参照 |
2
|
タイトル |
Direct Submission
|
雑誌名/登録機関名 |
Submitted (21-SEP-2021) Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute, AIST Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
|
出版年月 |
|
巻・号・ページ |
|
著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
PubMed |
|