| データID |
ANGE0000000003368
|
| データタイトル |
ゲノム（[Ruminococcus] gnavus strain NBRC 114413 plasmid unnamed1, complete sequence）
|
| 生物種名 |
[Ruminococcus] gnavus
|
| アクセッション番号またはID |
CP084015
|
| コメント |
[Ruminococcus] gnavus strain NBRC 114413 plasmid unnamed1, complete sequence.
|
| ゲノム配列のバージョン |
CP084015.1
|
| 登録日または更新日 |
2021-09-30
|
| 配列取得用URL |
|
|
|
|
|
| 配列ファイルダウンロード |
|
| CDSファイルダウンロード |
|
| 配列長（bp）または配列数（rc） |
6945
|
| 形態 |
circular
|
| BioProject |
|
| BioSample |
|
| 配列の種類 |
genomic DNA
|
| strain |
NBRC 114413
|
| 分離源 |
human feces
|
| plasmid |
unnamed1
|
| 備考 |
|
| 菌株へのコメント |
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ; ##Genome-Assembly-Data-START## ; Assembly Method :: Flye v. 2.8.3; Racon v. 1.4.20; Medaka v. 1.2.2; Pilon v. 1.23 ; Assembly Name :: Rgna_114413 ; Genome Representation :: Full ; Expected Final Version :: Yes ; Genome Coverage :: 334.0x ; Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI ; Annotation Date :: 09/23/2021 10:49:18 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 5.3 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 3,712 ; CDSs (total) :: 3,635 ; Genes (coding) :: 3,524 ; CDSs (with protein) :: 3,524 ; Genes (RNA) :: 77 ; rRNAs :: 5, 5, 5 (5S, 16S, 23S) ; complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) ; tRNAs :: 58 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 111 ; CDSs (without protein) :: 111 ; Pseudo Genes (ambiguous residues) :: 0 of 111 ; Pseudo Genes (frameshifted) :: 16 of 111 ; Pseudo Genes (incomplete) :: 98 of 111 ; Pseudo Genes (internal stop) :: 9 of 111 ; Pseudo Genes (multiple problems) :: 11 of 111 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
Characterization and demonstration of mock communities as control reagents for accurate human microbiome community measurements
|
| 雑誌名/登録機関名 |
Unpublished
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
| PubMed |
|
| 参照 |
2
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (22-SEP-2021) Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute, AIST Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
| PubMed |
|
