データID |
ANGE0000000003377
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データタイトル |
ゲノム(Staphylococcus epidermidis strain NBRC 113846 plasmid unnamed3, complete sequence)
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生物種名 |
Staphylococcus epidermidis
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アクセッション番号またはID |
CP084011
|
コメント |
Staphylococcus epidermidis strain NBRC 113846 plasmid unnamed3, complete sequence.
|
ゲノム配列のバージョン |
CP084011.1
|
登録日または更新日 |
2021-09-30
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配列取得用URL |
|
|
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配列ファイルダウンロード |
|
CDSファイルダウンロード |
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配列長(bp)または配列数(rc) |
2507
|
形態 |
circular
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BioProject |
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BioSample |
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配列の種類 |
genomic DNA
|
strain |
NBRC 113846
|
分離源 |
human skin
|
plasmid |
unnamed3
|
備考 |
|
菌株へのコメント |
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ; ##Genome-Assembly-Data-START## ; Assembly Method :: Flye v. 2.8.3; Racon v. 1.4.20; Medaka v. 1.2.2; Pilon v. 1.23 ; Assembly Name :: Sepi_113846 ; Genome Representation :: Full ; Expected Final Version :: Yes ; Genome Coverage :: 362.0x ; Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION ; ##Genome-Assembly-Data-END##; ; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI ; Annotation Date :: 09/23/2021 11:01:39 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 5.3 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 2,390 ; CDSs (total) :: 2,306 ; Genes (coding) :: 2,249 ; CDSs (with protein) :: 2,249 ; Genes (RNA) :: 84 ; rRNAs :: 7, 6, 6 (5S, 16S, 23S) ; complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) ; tRNAs :: 61 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 57 ; CDSs (without protein) :: 57 ; Pseudo Genes (ambiguous residues) :: 0 of 57 ; Pseudo Genes (frameshifted) :: 35 of 57 ; Pseudo Genes (incomplete) :: 31 of 57 ; Pseudo Genes (internal stop) :: 25 of 57 ; Pseudo Genes (multiple problems) :: 27 of 57 ; ##Genome-Annotation-Data-END##
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参照 |
1
|
タイトル |
Characterization and demonstration of mock communities as control reagents for accurate human microbiome community measurements
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雑誌名/登録機関名 |
Unpublished
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出版年月 |
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巻・号・ページ |
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著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
PubMed |
|
参照 |
2
|
タイトル |
Direct Submission
|
雑誌名/登録機関名 |
Submitted (21-SEP-2021) Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute, AIST Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
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出版年月 |
|
巻・号・ページ |
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著者 |
Tourlousse,D.M. Narita,K. Miura,T. Furukawa,M. Shimamura,M. Sekiguchi,Y. Kawasaki,H.
|
PubMed |
|