| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000004256
|
|---|---|
| データタイトル |
ゲノム（RefSeq:Barrientosiimonas endolithica strain NBRC 110608 chromosome, complete genome）
|
| 生物種名 |
Barrientosiimonas endolithica
|
| アクセッション番号またはID |
NZ_AP027735
|
| コメント |
Barrientosiimonas endolithica strain NBRC 110608 chromosome, complete genome.
|
| ゲノム配列のバージョン |
NZ_AP027735.1
|
| 登録日または更新日 |
2023-06-30
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
3684144
|
| 形態 |
circular
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
NBRC 110608
|
| 分離源 |
Pebbles of a fresh water dam
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
REFSEQ INFORMATION: The reference sequence is identical to AP027735.1.; Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10025872 ~~Annotated by DFAST https://dfast.ddbj.nig.ac.jp/~~; The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ##Genome-Assembly-Data-START## ; Assembly Method :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.0 ; Genome Coverage :: 600x ; Sequencing Technology :: Nanopore ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Date :: 06/22/2023 11:59:52 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 6.5 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA ; Genes (total) :: 3,729 ; CDSs (total) :: 3,673 ; Genes (coding) :: 3,197 ; CDSs (with protein) :: 3,197 ; Genes (RNA) :: 56 ; rRNAs :: 2, 2, 2 (5S, 16S, 23S) ; complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) ; tRNAs :: 47 ; ncRNAs :: 3 ; Pseudo Genes (total) :: 476 ; CDSs (without protein) :: 476 ; Pseudo Genes (ambiguous residues) :: 0 of 476 ; Pseudo Genes (frameshifted) :: 361 of 476 ; Pseudo Genes (incomplete) :: 129 of 476 ; Pseudo Genes (internal stop) :: 3 of 476 ; Pseudo Genes (multiple problems) :: 17 of 476 ; CRISPR Arrays :: 1 ; ##Genome-Annotation-Data-END##; COMPLETENESS: full length.
|
| 参照 |
1
|
| タイトル |
The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation
|
| 雑誌名/登録機関名 |
Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Wu,L. Ma,J.
|
| PubMed | |
| 参照 |
2
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (24-FEB-2023) Contact:Qinglan Sun Institute of Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data Centre for Microorganisms; NO.1 Beichen West Road, Chaoyang Disct, Beijing 100101, China
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Sun,Q. Mori,K.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
