| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000004266
|
|---|---|
| データタイトル |
ゲノム（RefSeq:Enterococcus faecalis ATCC 19433 = NBRC 100480 strain ATCC 19433, whole genome shotgun sequencing project）
|
| 生物種名 |
Enterococcus faecalis ATCC 19433 = NBRC 100480
|
| アクセッション番号またはID |
NZ_ASDA00000000
|
| コメント |
Enterococcus faecalis ATCC 19433 = NBRC 100480 strain ATCC 19433, whole genome shotgun sequencing project.
|
| ゲノム配列のバージョン |
NZ_ASDA00000000.1
|
| 登録日または更新日 |
2013-05-13
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
2876436
|
| 形態 |
linear
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
ATCC 19433
|
| 分離源 |
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
REFSEQ INFORMATION: The reference sequence is identical to ASDA00000000.1.; The Enterococcus faecalis ATCC 19433 = NBRC 100480 whole genome shotgun (WGS) project has the project accession NZ_ASDA00000000. This version of the project (01) has the accession number NZ_ASDA01000000, and consists of sequences ASDA01000001-ASDA01000011.; Please be aware that the annotation is done automatically with little or no manual curation.; ##Genome-Assembly-Data-START## ; Assembly Method :: allpaths v. R42411 ; Assembly Name :: Ente_faec_ATCC_19433_V1 ; Genome Coverage :: 144.0x ; Sequencing Technology :: Illumina ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Date :: 02/11/2024 06:39:19 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 6.6 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA ; Genes (total) :: 2,848 ; CDSs (total) :: 2,760 ; Genes (coding) :: 2,686 ; CDSs (with protein) :: 2,686 ; Genes (RNA) :: 88 ; rRNAs :: 7, 7, 7 (5S, 16S, 23S) ; complete rRNAs :: 5, 4, 7 (5S, 16S, 23S) ; partial rRNAs :: 2, 3 (5S, 16S) ; tRNAs :: 63 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 74 ; CDSs (without protein) :: 74 ; Pseudo Genes (ambiguous residues) :: 0 of 74 ; Pseudo Genes (frameshifted) :: 35 of 74 ; Pseudo Genes (incomplete) :: 28 of 74 ; Pseudo Genes (internal stop) :: 27 of 74 ; Pseudo Genes (multiple problems) :: 15 of 74 ; CRISPR Arrays :: 1 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
The Genome Sequence of Enterococcus faecalis ATCC_19433
|
| 雑誌名/登録機関名 |
Unpublished
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Earl,A.M. Gilmore,M.S. Lebreton,F. Walker,B. Young,S.K. Zeng,Q. Gargeya,S. Fitzgerald,M. Haas,B. Abouelleil,A. Alvarado,L. Arachchi,H.M. Berlin,A.M. Chapman,S.B. Dewar,J. Goldberg,J. Griggs,A. Gujja,S. Hansen,M. Howarth,C. Imamovic,A. Larimer,J. McCowan,C. Murphy,C. Neiman,D. Pearson,M. Priest,M. Roberts,A. Saif,S. Shea,T. Sisk,P. Sykes,S. Wortman,J. Nusbaum,C. Birren,B.
|
| PubMed |
|
| 参照 |
2
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (21-FEB-2013) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Earl,A.M. Gilmore,M.S. Lebreton,F. Walker,B. Young,S.K. Zeng,Q. Gargeya,S. Fitzgerald,M. Haas,B. Abouelleil,A. Alvarado,L. Arachchi,H.M. Berlin,A.M. Chapman,S.B. Dewar,J. Goldberg,J. Griggs,A. Gujja,S. Hansen,M. Howarth,C. Imamovic,A. Larimer,J. McCowan,C. Murphy,C. Neiman,D. Pearson,M. Priest,M. Roberts,A. Saif,S. Shea,T. Sisk,P. Sykes,S. Wortman,J. Nusbaum,C. Birren,B.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
