| データタイトル | 他機関での菌株情報 | 遺伝子型 | 復元液 | データID | 菌株番号 | カタログURL | 生物種名 | 生物種名（著者名含） | 基準株 | 来歴 | 分離源 | 分類 | 培養温度 | 培養培地 | 親株（変異株の場合） | 付加情報 |
|---|
解析情報 ゲノム
| データID | ANGE0000000004267 |
|---|---|
| データタイトル | ゲノム（RefSeq:Acetobacter nitrogenifigens DSM 23921 = NBRC 105050 strain DSM 23921, whole genome shotgun sequencing project） |
| 生物種名 | Acetobacter nitrogenifigens DSM 23921 = NBRC 105050 |
| アクセッション番号またはID | NZ_AUBI00000000 |
| コメント | Acetobacter nitrogenifigens DSM 23921 = NBRC 105050 strain DSM 23921, whole genome shotgun sequencing project. |
| ゲノム配列のバージョン | NZ_AUBI00000000.1 |
| 登録日または更新日 | 2014-06-11 |
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） | 4270291 |
| 形態 | linear |
| BioProject | |
| BioSample | |
| 配列の種類 | genomic DNA |
| strain | DSM 23921 |
| 分離源 | |
| plasmid | |
| 備考 | |
| 菌株へのコメント | REFSEQ INFORMATION: The reference sequence is identical to AUBI00000000.1.; The Acetobacter nitrogenifigens DSM 23921 = NBRC 105050 whole genome shotgun (WGS) project has the project accession NZ_AUBI00000000. This version of the project (01) has the accession number NZ_AUBI01000000, and consists of sequences AUBI01000001-AUBI01000052.; URL -- http://www.jgi.doe.gov~JGI Project ID: 1008523~Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)~Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)~ Tanja Woyke (microbe@cuba.jgi-psf.org)~Whole genome sequencing and draft assembly at JGI~Annotation by JGI~The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.~(http://www.genome.gov/page.cfm?pageID=10506376)~Full annotations are available from IMG.; ##MIGS-Data-START## ; country :: India ; investigation_type :: bacteria_archaea ; project_name :: Acetobacter nitrogenifigens DSM 23921 ; sequencing_meth :: WGS ; ref_biomaterial :: DSM 23921 ; finishing_strategy :: Level 1: Standard Draft ; GOLD Stamp ID :: Gi11063 ; Type Strain :: Yes ; Funding Program :: DOE-CSP 2012 ; Isolation Site :: Kombucha tea ; Gram Staining :: Gram- ; ##MIGS-Data-END##; ##Genome-Assembly-Data-START## ; Finishing Goal :: Improved High-Quality Draft ; Current Finishing Status :: Improved High-Quality Draft ; Assembly Method :: Unknown program v. before 2013-03-06 ; Genome Coverage :: Unknown ; Sequencing Technology :: Illumina HiSeq 2000 ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Name :: GCF_000429165.1-RS_2024_04_07 ; Annotation Date :: 04/07/2024 08:49:41 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 6.7 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA ; Genes (total) :: 3,872 ; CDSs (total) :: 3,815 ; Genes (coding) :: 3,729 ; CDSs (with protein) :: 3,729 ; Genes (RNA) :: 57 ; rRNAs :: 3, 2, 1 (5S, 16S, 23S) ; complete rRNAs :: 3, 1, 1 (5S, 16S, 23S) ; partial rRNAs :: 1 (16S) ; tRNAs :: 47 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 86 ; CDSs (without protein) :: 86 ; Pseudo Genes (ambiguous residues) :: 0 of 86 ; Pseudo Genes (frameshifted) :: 44 of 86 ; Pseudo Genes (incomplete) :: 65 of 86 ; Pseudo Genes (internal stop) :: 20 of 86 ; Pseudo Genes (multiple problems) :: 35 of 86 ; CRISPR Arrays :: 1 ; ##Genome-Annotation-Data-END## |
| 参照 | 1 |
| タイトル | Direct Submission |
| 雑誌名/登録機関名 | Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
| 出版年月 | |
| 巻・号・ページ | |
| 著者 | Kyrpides,N. Huntemann,M. Han,J. Chen,A. Mavromatis,K. Markowitz,V. Palaniappan,K. Ivanova,N. Schaumberg,A. Pati,A. Liolios,K. Nordberg,H.P. Cantor,M.N. Hua,S.X. Woyke,T. |
| PubMed | |
| 関連情報 |
このデータにリンクしている情報 |
1.微生物株情報
2.微生物種情報
5.文献情報
Not found
7.コレクション情報
8.提供機関情報
9.実験情報
Not found
10.プロジェクト情報
Not found
