| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000004350
|
|---|---|
| データタイトル |
ゲノム（RefSeq:Shewanella decolorationis strain NBRC 103170, whole genome shotgun sequencing project）
|
| 生物種名 |
Shewanella decolorationis
|
| アクセッション番号またはID |
NZ_BSOL00000000
|
| コメント |
Shewanella decolorationis strain NBRC 103170, whole genome shotgun sequencing project.
|
| ゲノム配列のバージョン |
NZ_BSOL00000000.1
|
| 登録日または更新日 |
2023-06-04
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
4838357
|
| 形態 |
linear
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
NBRC 103170
|
| 分離源 |
Activated sludge from a printing and dyeing waste-water treatment system
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
REFSEQ INFORMATION: The reference sequence is identical to BSOL00000000.1.; The Shewanella decolorationis whole genome shotgun (WGS) project has the project accession NZ_BSOL00000000. This version of the project (01) has the accession number NZ_BSOL01000000, and consists of sequences BSOL01000001-BSOL01000041.; Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10007922 ~~Annotated by DFAST https://dfast.ddbj.nig.ac.jp/~~; ##Genome-Assembly-Data-START## ; Assembly Method :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.0 ; Genome Coverage :: 65x ; Sequencing Technology :: Illumina ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Date :: 06/03/2023 15:21:40 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 6.5 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA ; Genes (total) :: 4,281 ; CDSs (total) :: 4,168 ; Genes (coding) :: 4,125 ; CDSs (with protein) :: 4,125 ; Genes (RNA) :: 113 ; rRNAs :: 7, 3, 4 (5S, 16S, 23S) ; complete rRNAs :: 7 (5S) ; partial rRNAs :: 3, 4 (16S, 23S) ; tRNAs :: 95 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 43 ; CDSs (without protein) :: 43 ; Pseudo Genes (ambiguous residues) :: 0 of 43 ; Pseudo Genes (frameshifted) :: 11 of 43 ; Pseudo Genes (incomplete) :: 29 of 43 ; Pseudo Genes (internal stop) :: 15 of 43 ; Pseudo Genes (multiple problems) :: 9 of 43 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation
|
| 雑誌名/登録機関名 |
Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Wu,L. Ma,J.
|
| PubMed | |
| 参照 |
2
|
| タイトル |
Draft genome sequence of Shewanella decolorationis strain NBRC 103170
|
| 雑誌名/登録機関名 |
Unpublished
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Sun,Q. Mori,K.
|
| PubMed |
|
| 参照 |
3
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (31-JAN-2023) Contact:Qinglan Sun Institute of Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao Yun Cun, Chaoyang, Beijing 100101, China
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Sun,Q. Mori,K.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
