| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000004586
|
|---|---|
| データタイトル |
ゲノム（RefSeq:Herbiconiux oxytropis strain CPCC 203406, whole genome shotgun sequencing project）
|
| 生物種名 |
Herbiconiux oxytropis
|
| アクセッション番号またはID |
NZ_JANLCL000000000
|
| コメント |
Herbiconiux oxytropis strain CPCC 203406, whole genome shotgun sequencing project.
|
| ゲノム配列のバージョン |
NZ_JANLCL000000000.1
|
| 登録日または更新日 |
2022-09-08
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
4154515
|
| 形態 |
linear
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
CPCC 203406
|
| 分離源 |
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
REFSEQ INFORMATION: The reference sequence is identical to JANLCL000000000.1.; The Herbiconiux oxytropis whole genome shotgun (WGS) project has the project accession NZ_JANLCL000000000. This version of the project (01) has the accession number NZ_JANLCL010000000, and consists of sequences JANLCL010000001-JANLCL010000074.; The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ##Genome-Assembly-Data-START## ; Assembly Method :: SOAPdenovo v. July-2010 ; Genome Representation :: Full ; Expected Final Version :: No ; Genome Coverage :: 312.0x ; Sequencing Technology :: Illumina HiSeq ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Date :: 09/21/2023 03:35:53 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 6.6 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA ; Genes (total) :: 3,984 ; CDSs (total) :: 3,931 ; Genes (coding) :: 3,887 ; CDSs (with protein) :: 3,887 ; Genes (RNA) :: 53 ; rRNAs :: 1, 1, 1 (5S, 16S, 23S) ; complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) ; tRNAs :: 47 ; ncRNAs :: 3 ; Pseudo Genes (total) :: 44 ; CDSs (without protein) :: 44 ; Pseudo Genes (ambiguous residues) :: 0 of 44 ; Pseudo Genes (frameshifted) :: 3 of 44 ; Pseudo Genes (incomplete) :: 42 of 44 ; Pseudo Genes (internal stop) :: 1 of 44 ; Pseudo Genes (multiple problems) :: 2 of 44 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (08-AUG-2022) China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Nanwei Road, No. 2, Beijing 100050, China
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Deng,Y. Han,X.-F. Zhang,Y.-Q.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
