| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000004606
|
|---|---|
| データタイトル |
ゲノム（RefSeq:Dyella dinghuensis strain DHOA06, whole genome shotgun sequencing project）
|
| 生物種名 |
Dyella dinghuensis
|
| アクセッション番号またはID |
NZ_RYZR00000000
|
| コメント |
Dyella dinghuensis strain DHOA06, whole genome shotgun sequencing project.
|
| ゲノム配列のバージョン |
NZ_RYZR00000000.1
|
| 登録日または更新日 |
2019-01-02
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
4218690
|
| 形態 |
linear
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
DHOA06
|
| 分離源 |
forest soil
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
REFSEQ INFORMATION: The reference sequence is identical to RYZR00000000.1.; The Dyella dinghuensis whole genome shotgun (WGS) project has the project accession NZ_RYZR00000000. This version of the project (01) has the accession number NZ_RYZR01000000, and consists of sequences RYZR01000001-RYZR01000015.; Bacteria and source DNA available from State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University. address:135 Xingang Road, W., Guangzhou 510275, P. R. China.; Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ##Genome-Assembly-Data-START## ; Assembly Date :: 2018 ; Assembly Method :: Velvet v. 1.2.10 ; Genome Representation :: Full ; Expected Final Version :: Yes ; Genome Coverage :: 181.0x ; Sequencing Technology :: Illumina Hiseq 4000 ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI RefSeq ; Annotation Name :: GCF_003977615.1-RS_2024_05_06 ; Annotation Date :: 05/06/2024 01:49:15 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 6.7 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA ; Genes (total) :: 3,753 ; CDSs (total) :: 3,694 ; Genes (coding) :: 3,686 ; CDSs (with protein) :: 3,686 ; Genes (RNA) :: 59 ; rRNAs :: 2, 2, 3 (5S, 16S, 23S) ; complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) ; partial rRNAs :: 1 (23S) ; tRNAs :: 48 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 8 ; CDSs (without protein) :: 8 ; Pseudo Genes (ambiguous residues) :: 0 of 8 ; Pseudo Genes (frameshifted) :: 1 of 8 ; Pseudo Genes (incomplete) :: 7 of 8 ; Pseudo Genes (internal stop) :: 0 of 8 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
Dyella dinghuensis sp. nov. DHOA06 and Dyella choica sp. nov. 4M-K27, isolated from forest soil
|
| 雑誌名/登録機関名 |
Unpublished
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Qiu,L.-H. Gao,Z.-H.
|
| PubMed |
|
| 参照 |
2
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (21-DEC-2018) School of Life Sciences, Sun Yat-sen University, No. 135, Xinggang West Road, Guangzhou, Guangdong 510275, China
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Qiu,L.-H. Gao,Z.-H.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
