| データタイトル | 分類 | 菌株番号 | 基準株 | データID |
|---|
解析情報 ゲノム
| データID |
ANGE0000000004620
|
|---|---|
| データタイトル |
ゲノム（Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis strain AM401, whole genome shotgun sequencing project）
|
| 生物種名 |
Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis
|
| アクセッション番号またはID |
VIFM00000000
|
| コメント |
Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis strain AM401, whole genome shotgun sequencing project.
|
| ゲノム配列のバージョン |
VIFM00000000.1
|
| 登録日または更新日 |
2019-07-04
|
| 配列取得用URL | |
| 配列ファイルダウンロード | |
| 配列長（bp）または配列数（rc） |
1077
|
| 形態 |
linear
|
| BioProject | |
| BioSample | |
| 配列の種類 |
genomic DNA
|
| strain |
AM401
|
| 分離源 |
soil
|
| plasmid |
|
| 備考 |
|
| 菌株へのコメント |
The Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis whole genome shotgun (WGS) project has the project accession VIFM00000000. This version of the project (01) has the accession number VIFM01000000, and consists of sequences VIFM01000001-VIFM01001077.; Bacteria and source DNA available from Soil.; The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/; ##Genome-Assembly-Data-START## ; Assembly Method :: SPAdes v. 3.13.0 ; Genome Representation :: Full ; Expected Final Version :: Yes ; Genome Coverage :: 30.0x ; Sequencing Technology :: Illumina HiSeq ; ##Genome-Assembly-Data-END##; ##Genome-Annotation-Data-START## ; Annotation Provider :: NCBI ; Annotation Date :: 06/29/2019 02:11:07 ; Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) ; Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ ; Annotation Software revision :: 4.8 ; Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region ; Genes (total) :: 10,403 ; CDSs (total) :: 10,313 ; Genes (coding) :: 10,017 ; CDSs (with protein) :: 10,017 ; Genes (RNA) :: 90 ; rRNAs :: 1, 3, 3 (5S, 16S, 23S) ; complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) ; partial rRNAs :: 2, 2 (16S, 23S) ; tRNAs :: 79 ; ncRNAs :: 4 ; Pseudo Genes (total) :: 296 ; CDSs (without protein) :: 296 ; Pseudo Genes (ambiguous residues) :: 0 of 296 ; Pseudo Genes (frameshifted) :: 69 of 296 ; Pseudo Genes (incomplete) :: 236 of 296 ; Pseudo Genes (internal stop) :: 25 of 296 ; Pseudo Genes (multiple problems) :: 33 of 296 ; CRISPR Arrays :: 1 ; ##Genome-Annotation-Data-END##
|
| 参照 |
1
|
| タイトル |
Direct Submission
|
| 雑誌名/登録機関名 |
Submitted (27-JUN-2019) Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Penglais, Aberystwyth SY23 3DA, United Kingdom
|
| 出版年月 |
|
| 巻・号・ページ |
|
| 著者 |
Livingstone,P. Whitworth,D.
|
| PubMed |
|
| 関連情報 |
このデータにリンクしている情報 |
