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微生物 : Kineosphaera limosa

微生物株情報

NBRC番号 100340
学名 Kineosphaera limosa
別名(シノニム) 該当データなし
由来 JCM 11399 <- S. Hanada, 225 (=strain Lpha5)
他保存機関番号 DSM 14548=JCM 11399=KACC 11907
他株番号 Lpha5
参考文献
12361296
Kineosphaera limosa gen. nov., sp. nov., a novel Gram-positive polyhydroxyalkanoate-accumulating coccus isolated from activated sludge. (Int J Syst Evol Microbiol. 2002)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseKILIM_003_00180
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseKILIM_010_00500
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseKILIM_019_00310
TRPE
(NRULE_0143)
Anthranilate synthase component IKILIM_005_00050
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKILIM_029_00550 KILIM_005_01470
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseKILIM_037_00080
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseKILIM_013_00020
C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymeraseKILIM_050_00300
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseKILIM_011_00620
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseKILIM_005_00670
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKILIM_024_00680 KILIM_024_00670 KILIM_027_00080 KILIM_024_00710
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKILIM_024_00700
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKILIM_024_00700
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinKILIM_024_00690
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseKILIM_010_00500
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseKILIM_028_00180
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseKILIM_028_00170
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeKILIM_025_00350 KILIM_011_00480
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseKILIM_025_00320
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseKILIM_027_00020
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseKILIM_027_00030
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterKILIM_049_00080 KILIM_022_00700 KILIM_037_00090 KILIM_080_00020
E
OPUE
(NRULE_0222)
Sodium/proline symporterKILIM_054_00190
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSKILIM_011_00720
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTKILIM_011_00740

ゲノム配列情報

BioProject IDPRJDB95
ローカスタグKILIM
INSDC entriesBAHD00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数166
サイズ(bp) 4,847,237
遺伝子数 4,422
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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