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微生物 : Gordonia effusa

微生物株情報

NBRC番号 100432
学名 Gordonia effusa
別名(シノニム) 該当データなし
由来 Chiba Univ. (Y. Mikami, IFM 10200)
他保存機関番号 IFM 10200=DSM 44810=JCM 12130=CCUG 53882=CIP 109345
他株番号
参考文献
16902014
Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. (Int J Syst Evol Microbiol. 2006)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOEFS_094_00030
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOEFS_014_00040
任意 
RUBA
(NRULE_0039)
RubredoxinGOEFS_014_00060 GOEFS_014_00050
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOEFS_036_01270 GOEFS_068_00010 GOEFS_015_00630 GOEFS_009_00450 GOEFS_073_00310
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須C
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseGOEFS_124_00190
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOEFS_033_00180
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AGOEFS_086_00450
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOEFS_023_00210
TRPE
(NRULE_0143)
Anthranilate synthase component IGOEFS_073_00770
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOEFS_063_00010
ARSC1
(NRULE_0017)
Arsenate reductaseGOEFS_115_00040
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOEFS_120_00420
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AGOEFS_086_00450
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGOEFS_052_00390
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOEFS_046_00430
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOEFS_046_00420
ECTC
(NRULE_0188)
L-ectoine synthaseGOEFS_046_00440
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOEFS_036_00220
Gentamicin resistance(NFUNC_0053)
必須A
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseGOEFS_124_00190
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGOEFS_092_00600
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOEFS_046_00430
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOEFS_046_00420
 
ECTC
(NRULE_0188)
L-ectoine synthaseGOEFS_046_00440
Kanamycin resistance(NFUNC_0052)
必須B
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseGOEFS_124_00190
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOEFS_132_00920
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOEFS_054_00440 GOEFS_061_00070 GOEFS_054_00470
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOEFS_017_00810 GOEFS_132_00870 GOEFS_061_00040 GOEFS_054_00460
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOEFS_021_00440
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOEFS_132_00870 GOEFS_017_00810 GOEFS_054_00460 GOEFS_061_00040
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOEFS_054_00450
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AGOEFS_086_00450
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOEFS_033_00180
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOEFS_065_00070
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOEFS_065_00170
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOEFS_065_00060
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOEFS_035_00070
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOEFS_035_00080
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOEFS_006_00140 GOEFS_052_00410
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOEFS_050_00540
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOEFS_050_00480

ゲノム配列情報

BioProject IDPRJDA71849
ローカスタグGOEFS
INSDC entriesBAEH00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数133
サイズ(bp) 4,703,019
遺伝子数 4,420
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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