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微生物 : Acinetobacter radioresistens

微生物株情報

NBRC番号 102413
学名 Acinetobacter radioresistens
別名（シノニム） 該当データなし
由来 IAM 13186 <- Y. Nishimura <- E. Kairiyama, FO-1
他保存機関番号 IAM 13186=ATCC 43998=DSM 6976=CIP 103788=LMG 10613=NCIMB 12753=JCM 9326
他株番号 FO-1
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseACRAD_29_00130
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153ACRAD_64_00110
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseACRAD_02_01590
任意 
RUBA
(NRULE_0039)
RubredoxinACRAD_02_01980
 
RUBB
(NRULE_0040)
Rubredoxin reductaseACRAD_02_01990
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinACRAD_22_00200 ACRAD_06_00540 ACRAD_06_00560 ACRAD_11_01100 ACRAD_20_01460 ACRAD_20_00020 ACRAD_20_01420 ACRAD_20_01440
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseACRAD_11_00730
TRPE
(NRULE_0143)
Anthranilate synthase component IACRAD_28_00760
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunitACRAD_20_01460
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunitACRAD_20_01470
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer componentACRAD_20_01480
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentACRAD_23_00710 ACRAD_31_00130 ACRAD_20_00040 ACRAD_20_01480 ACRAD_11_01070 ACRAD_02_02220
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinACRAD_22_00200 ACRAD_06_00540 ACRAD_06_00560 ACRAD_11_01100 ACRAD_20_01460 ACRAD_20_00020 ACRAD_20_01420 ACRAD_20_01440
 
FDR2
(NRULE_0057)
Ferredoxin reductaseACRAD_64_00120
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBACRAD_32_00260 ACRAD_60_00160
ARSC1
(NRULE_0017)
Arsenate reductaseACRAD_60_00190 ACRAD_32_00280
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBACRAD_32_00260 ACRAD_60_00160
ARSC2
(NRULE_0018)
Arsenate reductaseACRAD_60_00170
任意 
ARSH
(NRULE_0021)
ArsH proteinACRAD_60_00150 ACRAD_63_00040
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseACRAD_27_00730
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitACRAD_20_00020
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitACRAD_20_00030
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseACRAD_20_00050
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentACRAD_20_00040
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentACRAD_31_00130 ACRAD_23_00710 ACRAD_20_00040 ACRAD_20_01480 ACRAD_11_01070 ACRAD_02_02220
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinACRAD_06_00560 ACRAD_06_00540 ACRAD_20_00020 ACRAD_20_01460 ACRAD_22_00200 ACRAD_11_01100 ACRAD_20_01440 ACRAD_20_01420
 
FDR2
(NRULE_0057)
Ferredoxin reductaseACRAD_64_00120
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseACRAD_02_02350
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseACRAD_07_00460
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACRAD_31_00220
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRACRAD_33_00220
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACRAD_31_00220
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinACRAD_31_00210
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinACRAD_31_00200
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseACRAD_18_00580 ACRAD_14_00700
RIBA
(NRULE_0201)
GTP cyclohydrolase-2ACRAD_07_01340 ACRAD_18_00580
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDACRAD_28_00280
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseACRAD_18_00570
RIBE
(NRULE_0204)
Riboflavin synthaseACRAD_28_00300
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFACRAD_23_00530
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterACRAD_19_00050 ACRAD_02_02380
E
OPUE
(NRULE_0222)
Sodium/proline symporterACRAD_17_00210

ゲノム配列情報

BioProject IDPRJDB54
ローカスタグACRAD
INSDC entriesBAGY00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数95
サイズ(bp) 3,366,079
遺伝子数 3,221
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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