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Microbe : Halobacillus halophilus

Microbe Description

NBRC No. 102448
Scientific name Halobacillus halophilus
Synonymous name Sporosarcina halophila
History IAM 13060 <- IAM (M.V. Hao & K. Komagata, HK 814) <- CCM 3527 <- DSM 2266 <- H.J. Rolf, 3
Other culture collection No. ATCC 35676=CCM 3527=CECT 5013=DSM 2266=IAM 12846=IAM 13060=JCM 20832=KCTC 3685=LMG 17431=NCIMB 2269
Other No.
Reference
22583374
Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus. (Environ Microbiol. 2013)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHBHAL_1394 HBHAL_5092
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseHBHAL_1026
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseHBHAL_3175
C
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseHBHAL_1352
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseHBHAL_4670
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHBHAL_1942 HBHAL_4861
TRPE
(NRULE_0143)
Anthranilate synthase component IHBHAL_1936
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseHBHAL_1176
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHBHAL_2558
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinHBHAL_4223
ARSC2
(NRULE_0018)
Arsenate reductaseHBHAL_4222
Participant 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseHBHAL_4122
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHBHAL_2289 HBHAL_2551
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseHBHAL_1450
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseHBHAL_1519
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseHBHAL_1518
ECTC
(NRULE_0188)
L-ectoine synthaseHBHAL_1520
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBHBHAL_1577
Gentamicin resistance(NFUNC_0053)
RequireA
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseHBHAL_1352
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseHBHAL_1026
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylaseHBHAL_3406
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseHBHAL_1519
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseHBHAL_1518
 
ECTC
(NRULE_0188)
L-ectoine synthaseHBHAL_1520
Kanamycin resistance(NFUNC_0052)
RequireB
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseHBHAL_1352
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseHBHAL_1026
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHBHAL_2186
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHBHAL_4771 HBHAL_1021
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRHBHAL_3497
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHBHAL_1021 HBHAL_4771
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinHBHAL_1020
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinHBHAL_1019
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseHBHAL_3255
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseHBHAL_3257
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseHBHAL_1828 HBHAL_2864
PANC
(NRULE_0118)
Pantothenate synthetaseHBHAL_3256
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseHBHAL_3970 HBHAL_2383
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinHBHAL_4788 HBHAL_3269
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseHBHAL_2385 HBHAL_1222
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseHBHAL_4679
RIBA
(NRULE_0201)
GTP cyclohydrolase-2HBHAL_4679
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDHBHAL_4681
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseHBHAL_4678
RIBE
(NRULE_0204)
Riboflavin synthaseHBHAL_4680
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFHBHAL_1206
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseHBHAL_3175
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseHBHAL_4670
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterHBHAL_1880 HBHAL_1737 HBHAL_1354 HBHAL_1350 HBHAL_2815
E
OPUE
(NRULE_0222)
Sodium/proline symporterHBHAL_1614
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSHBHAL_1013
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTHBHAL_1014

Genomic Overview

BioProject IDPRJEA50647
Locus_tagHBHAL
INSDC entriesHE717024
Sequence statusComplete
Current status
Contig number3
Size(bp) 4,170,008
Gene 4,118
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus. (Environ Microbiol. 2013) PMID: 22583374

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.2 MB 1.0 MB 739.9 KB 326.3 KB