Microbe : Halobacillus halophilus

Microbe Description

NBRC No.	102448
Scientific name	Halobacillus halophilus
Synonymous name	Sporosarcina halophila
History	IAM 13060 <- IAM (M.V. Hao & K. Komagata, HK 814) <- CCM 3527 <- DSM 2266 <- H.J. Rolf, 3
Other culture collection No.	ATCC 35676=CCM 3527=CECT 5013=DSM 2266=IAM 12846=IAM 13060=JCM 20832=KCTC 3685=LMG 17431=NCIMB 2269
Other No.
Reference	22583374 Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus. (Environ Microbiol. 2013)

Functional Potential >>Details


Type	Pattern	Component Gene		CDS
Alanine racemization(NFUNC_0063)
Require	A	ALR (NRULE_0228)	Alanine racemase	HBHAL_1394 HBHAL_5092
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
Require	A	AAC3 (NRULE_0149)	Aminoglycoside N(3')-acetyltransferase	HBHAL_1026
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
Require	A	ANT6 (NRULE_0151)	Aminoglycoside 6-adenylyltransferase	HBHAL_3175
Require	C	ANT2 (NRULE_0153)	2''-aminoglycoside nucleotidyltransferase	HBHAL_1352
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
Require	A	APH6 (NRULE_0155)	Streptomycin 6-kinase	HBHAL_4670
Anthranilate biosynthesis(NFUNC_0038)
Require	A	GLAT (NRULE_0142)	Glutamine amidotransferase	HBHAL_1942 HBHAL_4861
Require	A	TRPE (NRULE_0143)	Anthranilate synthase component I	HBHAL_1936
Arginine degradation(NFUNC_0074)
Require	A	ARGI (NRULE_0239)	Arginase	HBHAL_1176
Aromatic azo compounds degradation(NFUNC_0073)
Require	A	AZOR (NRULE_0236)	FMN-dependent NADH-azoreductase	HBHAL_2558
Arsenical resistance(NFUNC_0004)
Require	B	ARSB1 (NRULE_0015)	Arsenical pump membrane protein	HBHAL_4223
Require	B	ARSC2 (NRULE_0018)	Arsenate reductase	HBHAL_4222
Participant		ARSA (NRULE_0014)	Arsenical pump-driving ATPase	HBHAL_4122
Bacitracin resistance(NFUNC_0022)
Require	A	UPPP (NRULE_0097)	Undecaprenyl-diphosphatase	HBHAL_2289 HBHAL_2551
Betaine biosynthesis (from choline)(NFUNC_0049)
Require	A	BETA (NRULE_0175)	Choline dehydrogenase	HBHAL_1450
Ectoine biosynthesis(NFUNC_0056)
Require	A	ECTB (NRULE_0186)	Diaminobutyrate--2-oxoglutarate transaminase	HBHAL_1519
		ECTA (NRULE_0187)	L-2,4-diaminobutyric acid acetyltransferase	HBHAL_1518
		ECTC (NRULE_0188)	L-ectoine synthase	HBHAL_1520
Fosfomycin resistance(NFUNC_0023)
Require	B	FOSB (NRULE_0099)	Metallothiol transferase FosB	HBHAL_1577
Gentamicin resistance(NFUNC_0053)
Require	A	ANT2 (NRULE_0153)	2''-aminoglycoside nucleotidyltransferase	HBHAL_1352
Participant		AAC3 (NRULE_0149)	Aminoglycoside N(3')-acetyltransferase	HBHAL_1026
Hydroxyectoine biosynthesis(NFUNC_0057)
Require	A	ECTD (NRULE_0189)	Ectoine hydroxylase	HBHAL_3406
Participant		ECTB (NRULE_0186)	Diaminobutyrate--2-oxoglutarate transaminase	HBHAL_1519
		ECTA (NRULE_0187)	L-2,4-diaminobutyric acid acetyltransferase	HBHAL_1518
		ECTC (NRULE_0188)	L-ectoine synthase	HBHAL_1520
Kanamycin resistance(NFUNC_0052)
Require	B	ANT2 (NRULE_0153)	2''-aminoglycoside nucleotidyltransferase	HBHAL_1352
Participant		AAC3 (NRULE_0149)	Aminoglycoside N(3')-acetyltransferase	HBHAL_1026
Metal-binding protein(NFUNC_0105)
Require	A	MOP (NRULE_0322)	Putative molybdenum-binding protein	HBHAL_2186
	C	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	HBHAL_4771 HBHAL_1021
	D	MNTR (NRULE_0327)	DtxR family transcriptional regulator MntR	HBHAL_3497
Molybdate transport (ABC transporter)(NFUNC_0097)
Require	A	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	HBHAL_1021 HBHAL_4771
Participant		MODB (NRULE_0325)	Molybdate ABC transporter permease protein	HBHAL_1020
Participant		MODC (NRULE_0326)	Molybdate ABC transporter ATP-binding protein	HBHAL_1019
(R)-pantothenate biosynthesis(NFUNC_0030)
Require	A	PAND (NRULE_0115)	Aspartate 1-decarboxylase	HBHAL_3255
		PANB (NRULE_0116)	3-methyl-2-oxobutanoate hydroxymethyltransferase	HBHAL_3257
		PANE (NRULE_0117)	2-dehydropantoate 2-reductase	HBHAL_1828 HBHAL_2864
		PANC (NRULE_0118)	Pantothenate synthetase	HBHAL_3256
Phenol degradation(NFUNC_0028)
Require	B	PHEA1 (NRULE_0083)	Aromatic ring hydroxylase	HBHAL_3970 HBHAL_2383
Participant		FDX1 (NRULE_0034)	Putative Rieske-type ferredoxin	HBHAL_4788 HBHAL_3269
Participant		FADR1 (NRULE_0101)	NADH-dependent flavin reductase	HBHAL_2385 HBHAL_1222
Riboflavin biosynthesis(NFUNC_0058)
Require	A	RIBB (NRULE_0200)	3,4-dihydroxy-2-butanone 4-phosphate synthase	HBHAL_4679
		RIBA (NRULE_0201)	GTP cyclohydrolase-2	HBHAL_4679
		RIBD (NRULE_0202)	Riboflavin biosynthesis protein RibD	HBHAL_4681
		RIBH (NRULE_0203)	6,7-dimethyl-8-ribityllumazine synthase	HBHAL_4678
		RIBE (NRULE_0204)	Riboflavin synthase	HBHAL_4680
Participant		RIBF (NRULE_0205)	Riboflavin biosynthesis protein RibF	HBHAL_1206
Streptomycin resistance(NFUNC_0054)
Require	A	ANT6 (NRULE_0151)	Aminoglycoside 6-adenylyltransferase	HBHAL_3175
Require	C	APH6 (NRULE_0155)	Streptomycin 6-kinase	HBHAL_4670
Uptake of osmoprotectant(NFUNC_0061)
Require	C	BCCT (NRULE_0220)	BCCT family transporter	HBHAL_1880 HBHAL_1737 HBHAL_1354 HBHAL_1350 HBHAL_2815
Require	E	OPUE (NRULE_0222)	Sodium/proline symporter	HBHAL_1614
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
Require	A	PDXS (NRULE_0206)	Pyridoxal biosynthesis lyase PdxS	HBHAL_1013
Require	A	PDXT (NRULE_0207)	Glutamine amidotransferase subunit PdxT	HBHAL_1014

Genomic Overview

BioProject ID	PRJEA50647
Locus_tag	HBHAL
INSDC entries	HE717024
Sequence status	Complete
Current status
Contig number	3
Size(bp)	4,170,008
Gene	4,118
Finishing goal
Assembly method
Coverage
Technology

Reference

Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus. (Environ Microbiol. 2013) PMID: 22583374

Data Download

Genomic nucleotide sequence	Nucleotide sequence of the coding regions	Translation of the coding sequneces	List of genes / ORFs
FASTA gz	FASTA gz	FASTA gz	TSV uncompressed

1.2 MB	1.0 MB	739.9 KB	326.3 KB