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Microbe : Thauera linaloolentis

Microbe Description

NBRC No. 102519
Scientific name Thauera linaloolentis
Synonymous name Not assigned
History IAM 15112 <- DSM 12138 <- J. Harder, 47Lol
Other culture collection No. CCUG 41526=CIP 105981=DSM 12138=IAM 15112=JCM 21573
Other No.
Reference
9841126
Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen-containing monoterpenes (linalool, menthol, and eucalyptol) nitrate. (Syst Appl Microbiol. 1998)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseC666_11580
n-alkane hydroxylation(NFUNC_0008)
RequireC
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitC666_03840 C666_03850 C666_13605 C666_13595
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitC666_03840 C666_13605 C666_13595 C666_03850
FDR1
(NRULE_0032)
Oxygenase electron transfer componentC666_10145 C666_03860 C666_06240 C666_06635 C666_16035 C666_16230
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinC666_13600 C666_03845
Participant 
RUBA
(NRULE_0039)
RubredoxinC666_06430
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitC666_13590 C666_03855
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinC666_10180 C666_10140 C666_03535 C666_03150 C666_01575 C666_15045 C666_15055 C666_15040 C666_11415 C666_11320 C666_11275
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseC666_17075
TRPE
(NRULE_0143)
Anthranilate synthase component IC666_16940
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseC666_00305
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBC666_06955
ARSC1
(NRULE_0017)
Arsenate reductaseC666_01745 C666_06960
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBC666_06955
ARSC2
(NRULE_0018)
Arsenate reductaseC666_06950
Participant 
ARSH
(NRULE_0021)
ArsH proteinC666_06965
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseC666_17170
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseC666_09300 C666_02970
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseC666_02960 C666_02965
 
PHAP1
(NRULE_0374)
PhasinC666_16000 C666_07110 C666_03975
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
RequireB
EDIO
(NRULE_0058)
extradiol dioxygenaseC666_03830 C666_09810 C666_10170 C666_16255 C666_17800
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenaseC666_16270 C666_03870
4OT
(NRULE_0061)
4-oxalocrotonate tautomeraseC666_17350
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylaseC666_03880 C666_17355
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseC666_03875 C666_10115 C666_16275
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseC666_03895
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseC666_16285 C666_03890 C666_10110 C666_19130
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseC666_07550
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseC666_07555
ECTC
(NRULE_0188)
L-ectoine synthaseC666_07545
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylaseC666_07540
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseC666_07550
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseC666_07555
 
ECTC
(NRULE_0188)
L-ectoine synthaseC666_07545
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseC666_09795
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinC666_10240 C666_14290 C666_05875
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorC666_05875
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinC666_14280 C666_09730
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRC666_02335
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinC666_09730 C666_14280
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorC666_05875
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinC666_14285
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinC666_14290
Phenol degradation(NFUNC_0028)
RequireA
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitC666_03840 C666_13595 C666_03850 C666_13605
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitC666_13595 C666_03840 C666_03850 C666_13605
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitC666_03855 C666_13590
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseC666_08740
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentC666_06635 C666_06240 C666_03860 C666_16230 C666_16035 C666_10145
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinC666_03845 C666_13600
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinC666_10140 C666_15055 C666_15045 C666_15040 C666_11415 C666_11320 C666_11275 C666_10180 C666_01575 C666_03535 C666_03150
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseC666_13875 C666_02145
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseC666_10730
Participant 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein AC666_10740
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BC666_10735
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DC666_10725
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EC666_10720
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseC666_13935
RIBA
(NRULE_0201)
GTP cyclohydrolase-2C666_12435 C666_13935
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDC666_18485
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseC666_13930
RIBE
(NRULE_0204)
Riboflavin synthaseC666_13940
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFC666_07790
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterC666_13385

Genomic Overview

BioProject IDPRJNA175415
Locus_tagC666
INSDC entriesAMXE01000000
Sequence statusWGS
Current status
Contig number220
Size(bp) 4,199,939
Gene 3,843
Finishing goal
Assembly methodVelvet v. 1.2.07
Coverage130.0x
Technology
  • Illumina HiSeq
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.2 MB 1.2 MB 794.8 KB 291.2 KB