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微生物 : Actinoalloteichus spitiensis

微生物株情報

NBRC番号 102582
学名 Actinoalloteichus spitiensis
別名(シノニム) 該当データなし
由来 JCM 12472 <- S. Mayilraj, RMV-1378
他保存機関番号 CIP 109023=DSM 44848=JCM 12472=MTCC 6194
他株番号 RMV-1378
参考文献
16280527
Actinoalloteichus spitiensis sp. nov., a novel actinobacterium isolated from a cold desert of the Indian Himalayas. (Int J Syst Evol Microbiol. 2005)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseACTIDRAF_18870 ACTIDRAF_17315
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseACTIDRAF_05950
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseACTIDRAF_24370
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseACTIDRAF_00445
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AACTIDRAF_13195
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseACTIDRAF_19100
TRPE
(NRULE_0143)
Anthranilate synthase component IACTIDRAF_03570
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseACTIDRAF_06905
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AACTIDRAF_13195
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseACTIDRAF_18920
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseACTIDRAF_18915
ECTC
(NRULE_0188)
L-ectoine synthaseACTIDRAF_18925
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseACTIDRAF_18930
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseACTIDRAF_18920
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseACTIDRAF_18915
 
ECTC
(NRULE_0188)
L-ectoine synthaseACTIDRAF_18925
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseACTIDRAF_10370
D
ERE
(NRULE_0168)
Erythromycin esteraseACTIDRAF_04430
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseACTIDRAF_22730
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinACTIDRAF_17925 ACTIDRAF_03165
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACTIDRAF_21330 ACTIDRAF_07110
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRACTIDRAF_03505 ACTIDRAF_18125
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACTIDRAF_21330 ACTIDRAF_07110
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinACTIDRAF_07115
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseACTIDRAF_19705
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseACTIDRAF_10210
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseACTIDRAF_19950
PANC
(NRULE_0118)
Pantothenate synthetaseACTIDRAF_19700
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AACTIDRAF_13195
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseACTIDRAF_06770
任意 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BACTIDRAF_06785
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EACTIDRAF_06780
Streptomycin resistance(NFUNC_0054)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseACTIDRAF_24370
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseACTIDRAF_00445
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseACTIDRAF_13575
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseACTIDRAF_13570
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinACTIDRAF_20565
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinACTIDRAF_20570
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinACTIDRAF_20575
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinACTIDRAF_20580
C
BCCT
(NRULE_0220)
BCCT family transporterACTIDRAF_13120
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSACTIDRAF_11965
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTACTIDRAF_11945

ゲノム配列情報

BioProject IDPRJNA198977
ローカスタグACTIDRAF
INSDC entriesNZ_AGVX02000000
ステータスWGS
解析状況
コンティグ数888
サイズ(bp) 5,706,534
遺伝子数 4,823
フィニッシングゴール
アセンブル方法Velvet v. 1.2.03
冗長度200.0x
シーケンス方法
  • Illumina GAII
参考文献
  • Detection of IgA and IgM antibodies to HIV-1 in neonates by radioimmune western blotting. (BMJ. 1992) PMID: 1628052

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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