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Microbe : Kocuria rhizophila

Microbe Description

NBRC No. 103217
Scientific name Kocuria rhizophila
Synonymous name Not assigned
History Daicel Chem. Indust., Ltd. (A. Matsuyama, DC2201) <- IFO 12708 <- IAM 1099 <- NIHJ <- ATCC 9341 <- FDA (W.A. Randall, PCI 1001) <- E.R. Squibb & Sons
Other culture collection No. ATCC 9341=IAM 1099=NBRC 3232=NCIB 8553=CCM 552=CECT 241=NCTC 8340=NBRC 12708=CIP 53.45=DSM 348
Other No. DC2201=PCI 1001=NCDO 758=IMET 10397
Reference
12892116
Reclassification of ATCC 9341 from Micrococcus luteus to Kocuria rhizophila. (Int J Syst Evol Microbiol. 2003)
18408034
Complete genome sequence of the soil actinomycete Kocuria rhizophila. (J Bacteriol. 2008)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseKRH_06630
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseKRH_20870
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseKRH_20680
TRPE
(NRULE_0143)
Anthranilate synthase component IKRH_11770
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKRH_13930
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireC
CHOX
(NRULE_0178)
Choline oxidaseKRH_18100
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKRH_01710
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKRH_01720
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKRH_01720
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinKRH_01730
Phenol degradation(NFUNC_0028)
RequireC
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseKRH_22060
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentKRH_03160 KRH_02110
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinKRH_14130 KRH_12820 KRH_02780
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseKRH_20730 KRH_20720
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseKRH_20870
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseKRH_06560
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseKRH_06570
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeKRH_18670 KRH_06550
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseKRH_18640
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseKRH_18540
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseKRH_18550
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterKRH_18120 KRH_11910 KRH_03970
E
OPUE
(NRULE_0222)
Sodium/proline symporterKRH_05020
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSKRH_01130
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTKRH_01120

Genomic Overview

BioProject IDPRJDA27833
Locus_tagKRH
INSDC entriesAP009152
Sequence statusComplete
Current status
Contig number1
Size(bp) 2,697,540
Gene 2,356
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of the soil actinomycete Kocuria rhizophila. (J Bacteriol. 2008) PMID: 18408034

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
782.4 KB 720.9 KB 491.2 KB 180.1 KB