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微生物 : Kocuria rhizophila

微生物株情報

NBRC番号 103217
学名 Kocuria rhizophila
別名（シノニム） 該当データなし
由来 Daicel Chem. Indust., Ltd. (A. Matsuyama, DC2201) <- IFO 12708 <- IAM 1099 <- NIHJ <- ATCC 9341 <- FDA (W.A. Randall, PCI 1001) <- E.R. Squibb & Sons
他保存機関番号 ATCC 9341=IAM 1099=NBRC 3232=NCIB 8553=CCM 552=CECT 241=NCTC 8340=NBRC 12708=CIP 53.45=DSM 348
他株番号 DC2201=PCI 1001=NCDO 758=IMET 10397
参考文献
12892116
Reclassification of ATCC 9341 from Micrococcus luteus to Kocuria rhizophila. (Int J Syst Evol Microbiol. 2003)
18408034
Complete genome sequence of the soil actinomycete Kocuria rhizophila. (J Bacteriol. 2008)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseKRH_06630
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseKRH_20870
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseKRH_20680
TRPE
(NRULE_0143)
Anthranilate synthase component IKRH_11770
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKRH_13930
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseKRH_18100
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKRH_01710
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKRH_01720
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKRH_01720
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinKRH_01730
Phenol degradation(NFUNC_0028)
必須C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseKRH_22060
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentKRH_03160 KRH_02110
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinKRH_14130 KRH_12820 KRH_02780
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseKRH_20730 KRH_20720
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseKRH_20870
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseKRH_06560
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseKRH_06570
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeKRH_18670 KRH_06550
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseKRH_18640
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseKRH_18540
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseKRH_18550
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterKRH_18120 KRH_11910 KRH_03970
E
OPUE
(NRULE_0222)
Sodium/proline symporterKRH_05020
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSKRH_01130
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTKRH_01120

ゲノム配列情報

BioProject IDPRJDA27833
ローカスタグKRH
INSDC entriesAP009152
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 2,697,540
遺伝子数 2,356
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of the soil actinomycete Kocuria rhizophila. (J Bacteriol. 2008) PMID: 18408034

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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