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Microbe : Yersinia rohdei

Microbe Description

NBRC No. 105715
Scientific name Yersinia rohdei
Synonymous name Not assigned
History GTC 01315 <- ATCC 43380 <- D.J. Brenner <- S. Aleksic, H271-36/78
Other culture collection No. ATCC 43380=CCUG 38833=CIP 103163=DSM 18270=GTC 01315=JCM 7376=LMG 8454
Other No. CDC 3022-85=H271-36/78
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseyrohd0001_16270 yrohd0001_34140
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporteryrohd0001_34150
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseyrohd0001_14590 yrohd0001_33330
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseyrohd0001_12950
TRPE
(NRULE_0143)
Anthranilate synthase component Iyrohd0001_32320
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseyrohd0001_26810
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinyrohd0001_31740
ARSC1
(NRULE_0017)
Arsenate reductaseyrohd0001_31750 yrohd0001_23340
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseyrohd0001_16950
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
C
BLAC
(NRULE_0124)
Beta-lactamase class Cyrohd0001_13780
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class Cyrohd0001_13780
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseyrohd0001_12950
DHPS
(NRULE_0144)
Dihydropteroate synthaseyrohd0001_7020
FOLA
(NRULE_0147)
Dihydrofolate reductaseyrohd0001_5510
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseyrohd0001_16960
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseyrohd0001_3670
FOLC
(NRULE_0160)
Bifunctional protein FolCyrohd0001_24870
PABB
(NRULE_0161)
Para-aminobenzoate synthase component Iyrohd0001_28940
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseyrohd0001_29850
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseyrohd0001_16270 yrohd0001_34140
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseyrohd0001_29070
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinyrohd0001_7290 yrohd0001_35930 yrohd0001_35970 yrohd0001_660
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryrohd0001_35930
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyrohd0001_35950 yrohd0001_10890 yrohd0001_22910
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRyrohd0001_2010
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRyrohd0001_13980
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRyrohd0001_20690
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyrohd0001_22910 yrohd0001_35950 yrohd0001_10890
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryrohd0001_35930
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinyrohd0001_35970
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseyrohd0001_3630
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseyrohd0001_3650
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseyrohd0001_1240
PANC
(NRULE_0118)
Pantothenate synthetaseyrohd0001_3640
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
Phytic acid hydrolysis(NFUNC_0085)
RequireB
APPA
(NRULE_0259)
Periplasmic AppA proteinyrohd0001_34970
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseyrohd0001_16850
RIBA
(NRULE_0201)
GTP cyclohydrolase-2yrohd0001_32480
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDyrohd0001_2550
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseyrohd0001_2560
RIBE
(NRULE_0204)
Riboflavin synthaseyrohd0001_27510
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFyrohd0001_5400
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinyrohd0001_21920
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinyrohd0001_21910
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinyrohd0001_21900
E
OPUE
(NRULE_0222)
Sodium/proline symporteryrohd0001_34610
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseyrohd0001_18940
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseyrohd0001_24920
SERC
(NRULE_0210)
Phosphoserine aminotransferaseyrohd0001_30930
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseyrohd0001_5550
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseyrohd0001_20930

Genomic Overview

BioProject IDPRJNA29767
Locus_tag
INSDC entriesACCD01000000
Sequence statusWGS
Current status
Contig number141
Size(bp) 4,317,478
Gene 3,853
Finishing goal
Assembly method
Coverage23.6X
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.3 MB 1.1 MB 760.4 KB 313.6 KB