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微生物 : Yersinia rohdei

微生物株情報

NBRC番号 105715
学名 Yersinia rohdei
別名（シノニム） 該当データなし
由来 GTC 01315 <- ATCC 43380 <- D.J. Brenner <- S. Aleksic, H271-36/78
他保存機関番号 ATCC 43380=CCUG 38833=CIP 103163=DSM 18270=GTC 01315=JCM 7376=LMG 8454
他株番号 CDC 3022-85=H271-36/78
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseyrohd0001_16270 yrohd0001_34140
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporteryrohd0001_34150
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseyrohd0001_14590 yrohd0001_33330
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseyrohd0001_12950
TRPE
(NRULE_0143)
Anthranilate synthase component Iyrohd0001_32320
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseyrohd0001_26810
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinyrohd0001_31740
ARSC1
(NRULE_0017)
Arsenate reductaseyrohd0001_31750 yrohd0001_23340
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseyrohd0001_16950
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
C
BLAC
(NRULE_0124)
Beta-lactamase class Cyrohd0001_13780
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class Cyrohd0001_13780
任意 
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferaseyrohd0001_12950
DHPS
(NRULE_0144)
Dihydropteroate synthaseyrohd0001_7020
FOLA
(NRULE_0147)
Dihydrofolate reductaseyrohd0001_5510
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseyrohd0001_16960
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseyrohd0001_3670
FOLC
(NRULE_0160)
Bifunctional protein FolCyrohd0001_24870
PABB
(NRULE_0161)
Para-aminobenzoate synthase component Iyrohd0001_28940
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseyrohd0001_29850
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseyrohd0001_16270 yrohd0001_34140
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseyrohd0001_29070
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinyrohd0001_7290 yrohd0001_35930 yrohd0001_35970 yrohd0001_660
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryrohd0001_35930
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyrohd0001_35950 yrohd0001_10890 yrohd0001_22910
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRyrohd0001_2010
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRyrohd0001_13980
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRyrohd0001_20690
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyrohd0001_22910 yrohd0001_35950 yrohd0001_10890
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryrohd0001_35930
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinyrohd0001_35970
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseyrohd0001_3630
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseyrohd0001_3650
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseyrohd0001_1240
PANC
(NRULE_0118)
Pantothenate synthetaseyrohd0001_3640
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class Ayrohd0001_31630
Phytic acid hydrolysis(NFUNC_0085)
必須B
APPA
(NRULE_0259)
Periplasmic AppA proteinyrohd0001_34970
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseyrohd0001_16850
RIBA
(NRULE_0201)
GTP cyclohydrolase-2yrohd0001_32480
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDyrohd0001_2550
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseyrohd0001_2560
RIBE
(NRULE_0204)
Riboflavin synthaseyrohd0001_27510
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFyrohd0001_5400
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinyrohd0001_21920
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinyrohd0001_21910
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinyrohd0001_21900
E
OPUE
(NRULE_0222)
Sodium/proline symporteryrohd0001_34610
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseyrohd0001_18940
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseyrohd0001_24920
SERC
(NRULE_0210)
Phosphoserine aminotransferaseyrohd0001_30930
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseyrohd0001_5550
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseyrohd0001_20930

ゲノム配列情報

BioProject IDPRJNA29767
ローカスタグ
INSDC entriesACCD01000000
ステータスWGS
解析状況
コンティグ数141
サイズ(bp) 4,317,478
遺伝子数 3,853
フィニッシングゴール
アセンブル方法
冗長度23.6X
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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