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微生物 : Yersinia bercovieri

微生物株情報

NBRC番号 105717
学名 Yersinia bercovieri
別名（シノニム） 該当データなし
由来 GTC 01317 <- ATCC 43970 <- G.R. Carter <- G. Wauters <- H. Bercovier
他保存機関番号 ATCC 43970=CCUG 26329=CIP 103323=GTC 01317
他株番号 WAIP 208=CNY 7506=CDC 2475-87
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseyberc0001_20350 yberc0001_760
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseyberc0001_37150
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseyberc0001_2210
TRPE
(NRULE_0143)
Anthranilate synthase component Iyberc0001_36530
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseyberc0001_22940
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseyberc0001_34720
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class Cyberc0001_3030
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class Cyberc0001_3030
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferaseyberc0001_2210
DHPS
(NRULE_0144)
Dihydropteroate synthaseyberc0001_8640
FOLA
(NRULE_0147)
Dihydrofolate reductaseyberc0001_9600
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseyberc0001_34710
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseyberc0001_11360
FOLC
(NRULE_0160)
Bifunctional protein FolCyberc0001_27460
PABB
(NRULE_0161)
Para-aminobenzoate synthase component Iyberc0001_20110
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseyberc0001_24420
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseyberc0001_21380
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseyberc0001_20240
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinyberc0001_610 yberc0001_37720 yberc0001_8400 yberc0001_37680
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryberc0001_37720
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyberc0001_37700 yberc0001_24300 yberc0001_38730 yberc0001_17810
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRyberc0001_14640
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRyberc0001_2770
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRyberc0001_30610
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyberc0001_38730 yberc0001_17810 yberc0001_37700 yberc0001_24300
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryberc0001_37720
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinyberc0001_37680
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseyberc0001_11400
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseyberc0001_11370
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseyberc0001_14050
PANC
(NRULE_0118)
Pantothenate synthetaseyberc0001_11380
Phytic acid hydrolysis(NFUNC_0085)
必須B
APPA
(NRULE_0259)
Periplasmic AppA proteinyberc0001_18000
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseyberc0001_34800
RIBA
(NRULE_0201)
GTP cyclohydrolase-2yberc0001_36490
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDyberc0001_14160
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseyberc0001_14150
RIBE
(NRULE_0204)
Riboflavin synthaseyberc0001_22230
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFyberc0001_9720
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseyberc0001_37150
Uptake of osmoprotectant(NFUNC_0061)
必須D
PROP
(NRULE_0221)
Osmoprotectant transporteryberc0001_33830
E
OPUE
(NRULE_0222)
Sodium/proline symporteryberc0001_18690
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseyberc0001_32580
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseyberc0001_27410
SERC
(NRULE_0210)
Phosphoserine aminotransferaseyberc0001_26030
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseyberc0001_9560
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseyberc0001_30280

ゲノム配列情報

BioProject IDPRJNA16104
ローカスタグ
INSDC entriesAALC02000000
ステータスWGS
解析状況
コンティグ数229
サイズ(bp) 4,347,293
遺伝子数 3,880
フィニッシングゴール
アセンブル方法
冗長度29.6X
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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