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Microbe : Yersinia bercovieri

Microbe Description

NBRC No. 105717
Scientific name Yersinia bercovieri
Synonymous name Not assigned
History GTC 01317 <- ATCC 43970 <- G.R. Carter <- G. Wauters <- H. Bercovier
Other culture collection No. ATCC 43970=CCUG 26329=CIP 103323=GTC 01317
Other No. WAIP 208=CNY 7506=CDC 2475-87
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseyberc0001_20350 yberc0001_760
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseyberc0001_37150
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseyberc0001_2210
TRPE
(NRULE_0143)
Anthranilate synthase component Iyberc0001_36530
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseyberc0001_22940
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseyberc0001_34720
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class Cyberc0001_3030
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class Cyberc0001_3030
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseyberc0001_2210
DHPS
(NRULE_0144)
Dihydropteroate synthaseyberc0001_8640
FOLA
(NRULE_0147)
Dihydrofolate reductaseyberc0001_9600
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseyberc0001_34710
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseyberc0001_11360
FOLC
(NRULE_0160)
Bifunctional protein FolCyberc0001_27460
PABB
(NRULE_0161)
Para-aminobenzoate synthase component Iyberc0001_20110
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseyberc0001_24420
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseyberc0001_21380
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseyberc0001_20240
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinyberc0001_610 yberc0001_37720 yberc0001_8400 yberc0001_37680
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryberc0001_37720
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyberc0001_37700 yberc0001_24300 yberc0001_38730 yberc0001_17810
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRyberc0001_14640
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRyberc0001_2770
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRyberc0001_30610
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinyberc0001_38730 yberc0001_17810 yberc0001_37700 yberc0001_24300
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatoryberc0001_37720
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinyberc0001_37680
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseyberc0001_11400
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseyberc0001_11370
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseyberc0001_14050
PANC
(NRULE_0118)
Pantothenate synthetaseyberc0001_11380
Phytic acid hydrolysis(NFUNC_0085)
RequireB
APPA
(NRULE_0259)
Periplasmic AppA proteinyberc0001_18000
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseyberc0001_34800
RIBA
(NRULE_0201)
GTP cyclohydrolase-2yberc0001_36490
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDyberc0001_14160
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseyberc0001_14150
RIBE
(NRULE_0204)
Riboflavin synthaseyberc0001_22230
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFyberc0001_9720
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseyberc0001_37150
Uptake of osmoprotectant(NFUNC_0061)
RequireD
PROP
(NRULE_0221)
Osmoprotectant transporteryberc0001_33830
E
OPUE
(NRULE_0222)
Sodium/proline symporteryberc0001_18690
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseyberc0001_32580
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseyberc0001_27410
SERC
(NRULE_0210)
Phosphoserine aminotransferaseyberc0001_26030
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseyberc0001_9560
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseyberc0001_30280

Genomic Overview

BioProject IDPRJNA16104
Locus_tag
INSDC entriesAALC02000000
Sequence statusWGS
Current status
Contig number229
Size(bp) 4,347,293
Gene 3,880
Finishing goal
Assembly method
Coverage29.6X
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
gz
TSV
uncompressed
1.3 MB 1.1 MB 763.9 KB 312.2 KB